Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00928 ATGCAACCTAGTTCCGGCAGTGGCGGTGGTGGTGGTTTGACACGGTTTCATTCAACTCCGGTGAATTGGATAGAATCATTTATTCTTAAAGAAGAAGATGAAGAACAACAAGACAACTTAAGTTTTACTCAACTGCTTTCCAATAACGCTGTTGCTGGTGGTTCTTCAAATTCTGATTCTCACTCTCAACCATATTTATCTGATTATTACTACAACTCTTCAACTCATACCCCAACTTCTCTCAATGCTAGTAATAATCCTTTCTCACAGGGAGTTGAGGATAGTGCTAATGCACTGGACCTTAAAATGGAAAAGATTTTAGAGGATTCAGTTCCTTGTAAGATTCGGGCTAAGCGTGGTTTTGCTACACATCCAAGGAGTATTGCTGAAAGGGTTCGGAGGACTCGGATTAGTGATCGCATAAGAAAACTTCAAGAACTTGTGCCAAACATGGATAAGCAAACAAATACTGCAGAGATGCTAGATGAGGCAGTAGCTTATGTCAAGTTTCTACAAAATCAAATCGAGGAGCTAACAGAACAACAACGAAGGTGTAAATGCACGATTCACGAGTAA 576 0.401 MQPSSGSGGGGGLTRFHSTPVNWIESFILKEEDEEQQDNLSFTQLLSNNAVAGGSSNSDSHSQPYLSDYYYNSSTHTPTSLNASNNPFSQGVEDSANALDLKMEKILEDSVPCKIRAKRGFATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTAEMLDEAVAYVKFLQNQIEELTEQQRRCKCTIHE 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00928 191 Coils Coil 161 188 - -
Trre7g00928 191 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 38 185 - -
Trre7g00928 191 FunFam Transcription factor bHLH130 family 122 190 - -
Trre7g00928 191 Pfam Helix-loop-helix DNA-binding domain 126 172 IPR011598 GO:0046983
Trre7g00928 191 Gene3D - 122 191 IPR036638 GO:0046983
Trre7g00928 191 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 171 IPR011598 GO:0046983
Trre7g00928 191 CDD bHLH_AtbHLH_like 126 178 IPR045239 -
Trre7g00928 191 SMART finulus 127 177 IPR011598 GO:0046983
Trre7g00928 191 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 189 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00928 Trre-Chr7 6163282 6165566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00928 11 191 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09180 47.895 1.28e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre7g00928 HLH 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00928 - - gmx:100527723 191.045