Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00906 ATGGCTTTTTGGGGTGTTGAAATCAAACCTGGAAAGCCTTTTACTCACACATACGATGGTTCCAAAGGACGCCTTCACATTTCAATGGCCACTTTGGGACTTGGCACTGCAATCACGAAAAGCACACTGCAATGTAATGTGGGAAACAAAAGCCCTGTTTATCTTTGCTCTCTTTATCCTGGAAAAACTGAGTCGTTGCAATTGAATTTGGAGCTTGAGGAAGATGGCAATGTTATTTTCTCCGTCATTGGCCCTCGGAGTATTCATCTATGCGGTTATTATCTTGCTCGTGGCCGCTATTCCAATACTCTTGATGAATCGGAATCATATGGAGAAGATATAGCTGATACAGAAACAGAGAAATCCGTTCACAGTGATGAAGATGACTACGATGATAGTTTTATTGATGATGACAATGATCCAGCAGTTTTCTCAGCATCTCCTATTTCCAATGAAGAGGATGCATCTTATGATAGCGGACGGAAAAGTGCGAAAGGCAGCCGAAGAAGGCTGAGGAAGAAGTACCAATTGGTAGAGTCGGATGATGATATTGGTCTTGAAGAAAAGAAAATTGTCAATGACAATGTGTTTGTACAATCTCAGGAAACTGATAATGAAGATAGTCTACCAATTTCATCTATTTGCAAGAATAAAGCCTCTGGAAGGATCTTGGATCAGGAAATGGATGATATTGTTGACAAAGAAGCAGTCGATGCTGGCAAAAAAGACAGTGAAGACCCTGAGAATAGTACTATTGAAACAAAATTGAAAACCGACAATGTTGTTGCAGATAATCAGACTCATAGCAGGGAAGCTGAACCCTCAGATCCCTTGGCAGTTCCTTGCACTGTTCCGGATGTTGGGGATATTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTGTAATGGTCATTCCACCGAACTAGATAATGCTGCGCAAGATGAGCAAAAAATGAACACGGCCCAGGATCTCTTGGATCAGGAAATGGCTGATAATGTTGACAAAGAAGCAGTTGATGCTGGAAAAAAAGACGGCGAAGACCCTGAGAATAGTACAATTGAAACAATGAAAACTGACAATGTTGTTACAGATATTCAGACTCACAGGGAAGCTGAACCCTCAGATCCCTTGGCAATTCCTTGCACTGTTCCGGATGTTGGGGATGTTAAAAAGTCAAAAAAGAAAAAGAAGGGAAAGGAGAAAGAAACCAAGAGTTCTTCTAATGGTCATTCCATCGAACTAGATAATGCTGCACAAGATGAGCAAAAAATGAACATGGCCCAGGATCTCTTGGATCAGGAAATGGCTGATAATGTTGACAAAGAAGCCGTTTATGCTGGCAATAATGAACAGCACCAGCAGCAAGCTGATGATAAGAAAGCTGAAACCGAGGATAAAATACTTCCTTCTTCACAGGTTGGTCAAGGACAGGATGAAAAACCAAAGAGAAAAAGGAAGGAACGGTCAAAGGAGGAGACAATTTTTACTGCTGATGATGCTTGTATTAACAATGTTGTTAACCTGCCACAGGGAAATGAAGGCAATAATCAGGACATAGTTAATAGGGATGTTAAGATTTCAGACAGTGTTGCACTACCTTCCACTGAAACGGATTCTCCAAAGAAAACAAAGAGGAGAAAAAAAGAACATAAGAACAAATCCTCACTTCCTGAAGGTGGCAATGGAAATGCTGAAGGTATCATTCAAGATGAGGAAGCCAACAAAGAGACAGCAGAGTCCGATAGTCTGATTCATAAACTTTCTGAAACGAAAGAGCAACATCAGAAGCTAACAATTGAAAATGTGGACAATGGGGCTCAAGACAATCCCGATGGAAATCAATCTGAAGATAAGAAGGTTAAGAAAAAGAAGAAAAGTAAAAGTCAGGGCAGTGAAGTTGCAAATTCTGCTTTGCCTGTATCGGTTGAGCCAAGTACCGAGATGATGAAGGAGGATGGAAATAATATGGAGGATACAAAGTCTTCCCAAGTTAGAACATTGTCAAATGGACTTGTTATTCAAGAGCTAGAGACGGGGAAAGAAAATGGGAAAATTGCTGCATTAGGGAAAAAGATCAGCATCAATTACTCTGGCAAGTTGAAGGAAAATGGTGTGGAGGTTGAGTCAAATGCTGGCCAAGCCCCTTTCAAATTTCGCCTTGGTAAAGGAGAAGTTATTGAGGGTTTGGATATTGGCCTTGAAGGCATGCGAGTTGGAGAAAAGAGAAGACTTGTAATTCCACCATCAATGACGTCTAAGAAGAATGGTGACAGTGAAAACATACCACCGAATTCATGGTTGATTTATGAATTGGAACTTGTTAAAGTGCATTGA 2355 0.4051 MAFWGVEIKPGKPFTHTYDGSKGRLHISMATLGLGTAITKSTLQCNVGNKSPVYLCSLYPGKTESLQLNLELEEDGNVIFSVIGPRSIHLCGYYLARGRYSNTLDESESYGEDIADTETEKSVHSDEDDYDDSFIDDDNDPAVFSASPISNEEDASYDSGRKSAKGSRRRLRKKYQLVESDDDIGLEEKKIVNDNVFVQSQETDNEDSLPISSICKNKASGRILDQEMDDIVDKEAVDAGKKDSEDPENSTIETKLKTDNVVADNQTHSREAEPSDPLAVPCTVPDVGDIKKSKKKKKGKEKETKSSCNGHSTELDNAAQDEQKMNTAQDLLDQEMADNVDKEAVDAGKKDGEDPENSTIETMKTDNVVTDIQTHREAEPSDPLAIPCTVPDVGDVKKSKKKKKGKEKETKSSSNGHSIELDNAAQDEQKMNMAQDLLDQEMADNVDKEAVYAGNNEQHQQQADDKKAETEDKILPSSQVGQGQDEKPKRKRKERSKEETIFTADDACINNVVNLPQGNEGNNQDIVNRDVKISDSVALPSTETDSPKKTKRRKKEHKNKSSLPEGGNGNAEGIIQDEEANKETAESDSLIHKLSETKEQHQKLTIENVDNGAQDNPDGNQSEDKKVKKKKKSKSQGSEVANSALPVSVEPSTEMMKEDGNNMEDTKSSQVRTLSNGLVIQELETGKENGKIAALGKKISINYSGKLKENGVEVESNAGQAPFKFRLGKGEVIEGLDIGLEGMRVGEKRRLVIPPSMTSKKNGDSENIPPNSWLIYELELVKVH 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00906 784 MobiDBLite consensus disorder prediction 114 128 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 109 172 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 234 671 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 310 333 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 234 253 - -
Trre7g00906 784 Pfam Nucleoplasmin-like domain 3 95 IPR041232 -
Trre7g00906 784 Gene3D Nucleoplasmin core domain 1 98 - -
Trre7g00906 784 SUPERFAMILY FKBP-like 655 783 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 576 605 - -
Trre7g00906 784 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 693 781 IPR001179 GO:0003755
Trre7g00906 784 Gene3D - 650 784 IPR046357 GO:0003755
Trre7g00906 784 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 41 783 - -
Trre7g00906 784 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 696 784 IPR001179 GO:0003755
Trre7g00906 784 MobiDBLite consensus disorder prediction 335 360 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 510 544 - -
Trre7g00906 784 MobiDBLite consensus disorder prediction 484 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00906 Trre-Chr7 6046682 6054283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00906 696 781 Calmodulin-binding Proteins AT5G48570 36.782 3.74e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00906 K14826 - jre:109006154 447.588