Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00884 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGTGAACGGAGGTGGTGGTGGTGGTGGTGGAGTAGCCGGAGGAGAAGGAGGTGGTGTTGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACTTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGGCACAGAGATAGAAACAGCGAGAGAGATCGTGGTGATGGGGAGAAGGAAAGGGATCACCACCGCAGAGATCATCGACATCGAGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATAGAGATAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGATCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGTATGGGAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCAAGGAGGAATCAATGCACCGGTTTTTGGTGGGTCTTGTTCGTCTTCAACTGGAAATTATATCTACTTTGGTAGACATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGTTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTTGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTGACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAATGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCTGTCTTCTATCCGGAAAACAAATTTGCTCAGGGAGATTATGAAGACTAG 1941 0.456 MAEYEAEERYEEEVNGGGGGGGGVAGGEGGGVGEDLDTTHPFPSSASSPQLLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRNSERDRGDGEKERDHHRRDHRHRDRKDRERDRGRDRDRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWEKVHIKLHAVIWAMLGYLPHCADNGREPTSVAFMSKEESMHRFLVGLVRLQLEIISTLVDITAPNPAIPGVLQNMFPMVTSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYED 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00884 646 Gene3D - 540 645 IPR012677 -
Trre7g00884 646 PANTHER RNA-BINDING PROTEIN 58 644 - -
Trre7g00884 646 CDD RRM1_U2AF65 311 393 - -
Trre7g00884 646 SUPERFAMILY RNA-binding domain, RBD 433 635 IPR035979 GO:0003676
Trre7g00884 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 432 510 IPR000504 GO:0003723
Trre7g00884 646 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 273 644 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre7g00884 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 312 395 IPR000504 GO:0003723
Trre7g00884 646 FunFam U2 snRNP auxiliary factor large subunit 307 408 - -
Trre7g00884 646 FunFam U2 snRNP auxiliary factor large subunit 540 645 - -
Trre7g00884 646 SUPERFAMILY RNA-binding domain, RBD 294 398 IPR035979 GO:0003676
Trre7g00884 646 CDD RRM2_U2AF65 432 508 - -
Trre7g00884 646 FunFam U2 snRNP auxiliary factor large subunit 409 522 - -
Trre7g00884 646 MobiDBLite consensus disorder prediction 1 186 - -
Trre7g00884 646 Gene3D - 423 528 IPR012677 -
Trre7g00884 646 Gene3D - 307 408 IPR012677 -
Trre7g00884 646 MobiDBLite consensus disorder prediction 116 174 - -
Trre7g00884 646 MobiDBLite consensus disorder prediction 57 109 - -
Trre7g00884 646 Coils Coil 66 86 - -
Trre7g00884 646 SMART rrm1_1 313 391 IPR000504 GO:0003723
Trre7g00884 646 SMART rrm1_1 546 632 IPR000504 GO:0003723
Trre7g00884 646 SMART rrm1_1 433 506 IPR000504 GO:0003723
Trre7g00884 646 MobiDBLite consensus disorder prediction 40 56 - -
Trre7g00884 646 CDD RRM3_U2AF65 544 632 - -
Trre7g00884 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 569 629 IPR000504 GO:0003723
Trre7g00884 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 434 503 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00884 Trre-Chr7 5893356 5899584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00884 434 625 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.26e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00884 K12837 - gmx:100793801 682.945