Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00883 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGTGAACGGAGGTGGTGGTGGTGGTGGTGGAGTAGCCGGAGGAGAAGGAGGTGGTGTTGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACTTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGGCACAGAGATAGAAACAGCGAGAGAGATCGTGGTGATGGGGAGAAGGAAAGGGATCACCACCGCAGAGATCATCGACATCGAGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATAGAGATAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGATCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGTATGGGAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCAAGGAGGAATCAATGCACCGGTTTTTGGTGGGTCTTGTTCGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGTTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTTGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTGACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAATGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCTGTCTTCTATCCGGAAAACAAATTTGCTCAGGGAGATTATGAAGACTAG 1911 0.4584 MAEYEAEERYEEEVNGGGGGGGGVAGGEGGGVGEDLDTTHPFPSSASSPQLLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRNSERDRGDGEKERDHHRRDHRHRDRKDRERDRGRDRDRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTVWEKVHIKLHAVIWAMLGYLPHCADNGREPTSVAFMSKEESMHRFLVGLVRQITAPNPAIPGVLQNMFPMVTSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYED 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00883 636 FunFam U2 snRNP auxiliary factor large subunit 530 635 - -
Trre7g00883 636 PANTHER RNA-BINDING PROTEIN 58 634 - -
Trre7g00883 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 385 IPR000504 GO:0003723
Trre7g00883 636 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 263 634 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre7g00883 636 SMART rrm1_1 536 622 IPR000504 GO:0003723
Trre7g00883 636 SMART rrm1_1 423 496 IPR000504 GO:0003723
Trre7g00883 636 SMART rrm1_1 303 381 IPR000504 GO:0003723
Trre7g00883 636 Gene3D - 530 635 IPR012677 -
Trre7g00883 636 Gene3D - 413 518 IPR012677 -
Trre7g00883 636 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 422 500 IPR000504 GO:0003723
Trre7g00883 636 CDD RRM3_U2AF65 534 622 - -
Trre7g00883 636 SUPERFAMILY RNA-binding domain, RBD 423 626 IPR035979 GO:0003676
Trre7g00883 636 MobiDBLite consensus disorder prediction 1 186 - -
Trre7g00883 636 CDD RRM1_U2AF65 301 383 - -
Trre7g00883 636 Gene3D - 297 398 IPR012677 -
Trre7g00883 636 FunFam U2 snRNP auxiliary factor large subunit 399 512 - -
Trre7g00883 636 MobiDBLite consensus disorder prediction 116 174 - -
Trre7g00883 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 559 619 IPR000504 GO:0003723
Trre7g00883 636 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 424 493 IPR000504 GO:0003723
Trre7g00883 636 MobiDBLite consensus disorder prediction 57 109 - -
Trre7g00883 636 Coils Coil 66 86 - -
Trre7g00883 636 FunFam U2 snRNP auxiliary factor large subunit 297 398 - -
Trre7g00883 636 MobiDBLite consensus disorder prediction 40 56 - -
Trre7g00883 636 CDD RRM2_U2AF65 422 498 - -
Trre7g00883 636 SUPERFAMILY RNA-binding domain, RBD 284 388 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00883 Trre-Chr7 5893356 5899584 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00883 424 615 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.67e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00883 K12837 - gmx:100793801 701.434