Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00882 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGTGAACGGAGGTGGTGGTGGTGGTGGTGGAGTAGCCGGAGGAGAAGGAGGTGGTGTTGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACTTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGGCACAGAGATAGAAACAGCGAGAGAGATCGTGGTGATGGGGAGAAGGAAAGGGATCACCACCGCAGAGATCATCGACATCGAGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATAGAGATAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGATCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGCAAAAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGTTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTTGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTGACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAATGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCTGTCTTCTATCCGGAAAACAAATTTGCTCAGGGAGATTATGAAGACTAG 1761 0.4577 MAEYEAEERYEEEVNGGGGGGGGVAGGEGGGVGEDLDTTHPFPSSASSPQLLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRNSERDRGDGEKERDHHRRDHRHRDRKDRERDRGRDRDRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKSKRVSGFDLAPPASAMLAGAAAVTGQITAPNPAIPGVLQNMFPMVTSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYED 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00882 586 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 252 335 IPR000504 GO:0003723
Trre7g00882 586 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 64 584 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre7g00882 586 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 450 IPR000504 GO:0003723
Trre7g00882 586 Gene3D - 247 348 IPR012677 -
Trre7g00882 586 Gene3D - 480 585 IPR012677 -
Trre7g00882 586 SMART rrm1_1 486 572 IPR000504 GO:0003723
Trre7g00882 586 SMART rrm1_1 373 446 IPR000504 GO:0003723
Trre7g00882 586 SMART rrm1_1 253 331 IPR000504 GO:0003723
Trre7g00882 586 MobiDBLite consensus disorder prediction 1 187 - -
Trre7g00882 586 CDD RRM1_U2AF65 251 333 - -
Trre7g00882 586 CDD RRM2_U2AF65 372 448 - -
Trre7g00882 586 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 509 569 IPR000504 GO:0003723
Trre7g00882 586 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 443 IPR000504 GO:0003723
Trre7g00882 586 Gene3D - 363 468 IPR012677 -
Trre7g00882 586 SUPERFAMILY RNA-binding domain, RBD 234 338 IPR035979 GO:0003676
Trre7g00882 586 MobiDBLite consensus disorder prediction 116 174 - -
Trre7g00882 586 MobiDBLite consensus disorder prediction 57 109 - -
Trre7g00882 586 SUPERFAMILY RNA-binding domain, RBD 373 576 IPR035979 GO:0003676
Trre7g00882 586 Coils Coil 66 86 - -
Trre7g00882 586 CDD RRM3_U2AF65 484 572 - -
Trre7g00882 586 MobiDBLite consensus disorder prediction 40 56 - -
Trre7g00882 586 FunFam U2 snRNP auxiliary factor large subunit 247 348 - -
Trre7g00882 586 PANTHER RNA-BINDING PROTEIN 57 584 - -
Trre7g00882 586 FunFam U2 snRNP auxiliary factor large subunit 480 585 - -
Trre7g00882 586 FunFam U2 snRNP auxiliary factor large subunit 349 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00882 Trre-Chr7 5893356 5899584 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00882 374 565 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 4.01e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00882 K12837 - gmx:100793801 728.013