Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00881 ATGGCTGAATACGAAGCAGAAGAGAGATACGAAGAAGAAGTGAACGGAGGTGGTGGTGGTGGTGGTGGAGTAGCCGGAGGAGAAGGAGGTGGTGTTGGAGAGGATCTTGACACTACTCATCCATTCCCTTCTTCTGCATCTTCTCCTCAACTTCTCGATCAATCTGTTTCCAAATCTCGCCATGAATCTCGTGATTATGATAGAGAATCTTCGAGAAGCAGAGAAAAGGAACGAGAGAAAGATAGGAAAAGAGAAAAGGAGAGGCACAGAGATAGAAACAGCGAGAGAGATCGTGGTGATGGGGAGAAGGAAAGGGATCACCACCGCAGAGATCATCGACATCGAGACAGAAAGGATAGGGAAAGGGATAGGGGTAGGGATAGAGATAGGGATGATGGTGATTCTCACAGAAGTCGTGACCGTGACAGAAGAAGGGATTATGATCGAGAGGAAAGGCATAAGCGTAGGTCTCGATCTCGATCTATTTCACCGTCTAAGGATAGATCTGAGCATGGAACAAGGTCACGGTCTCGCTCAAAGAGGGTTAGTGGTTTTGATTTGGCTCCCCCTGCTTCGGCAATGTTAGCTGGTGCTGCGGCTGTTACAGTATGGGAAAAAGTTCATATCAAATTGCATGCTGTTATCTGGGCAATGTTGGGCTACTTGCCCCACTGTGCTGACAATGGGCGTGAGCCGACATCTGTAGCTTTTATGTCCAAGGAGGAATCAATGCACCGGTTTTTGGTGGGTCTTGTTCGTCAGATTACTGCGCCAAATCCTGCAATTCCTGGAGTGCTGCAAAACATGTTTCCAATGGTTACTAGTCAGATGCAGCAGTTCAATGCTCTCCCTATGATGCCAATTCAGGCTATGACACAACAGGCTACTCGACATGCTAGGCGTGTGTATGTTGGTGGACTCCCACCTACAGCCAATGAGCAGTCTGTTGCTATTTTCTTCAGCCAGGTCATGGCTAGTATTGGAGGAAATACTGCTGGTCCAGGTGATGCGGTGGTCAATGTTTACATTAACCATGACAAAAAATTTGCCTTTGTTGAGATGAGGTCCGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATTATTTTTGAGGGGGCACCTGTCAAAGTCAGGAGACCTACTGATTACAACCCTTCTCTAGCTGCTACTCTAGGCCCAAGCCAACCTAACCCAAACCTGAACCTTGGTGCTGTTGGCTTGACACCTGGGTCAGCTGGTGGACTTGAAGGTCCTGATCGCATTTTTGTGGGTGGACTTCCCTATTACTTCACAGAAACTCAGATCAGGGAGCTTTTGGAAACTTTTGGTCCTCTTCGGGGTTTCGATCTGGTGAAAGATAGAGAAACAGGAAACTCAAAGGGTTATGCATTTTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTGAATGGAATTAAGATGGGAGATAAGACTCTTACCGTTAGACGAGCTAATCAAGGTACAACCCAGCCTAAACCTGAACAAGAGAGCATTTTAATGCATGCACAACAGCAAATTGCTCTGCAGAAACTTATATTTCAACCAGCATTAGTGGCTACAAAGGTGGTGTGTTTAACTAATGCAGTTGCTCCTGATGAGCTCAAAGAAGATGAGGACTATGAAGAGATTATCGAAGACATGAGACAAGAGTGCTCCAAATTTGGTACTTTGGTGAATGTTGTGATCCCTCGTCCACAACCAGATGGAGATCTATCTGGTGGAGTTGGAAAGGTGTTTTTGGAATATGTGGATATTGAGGGTGCTACAAAAGCCCGCACTGGATTGAATGGGAGAAAATTTGGTGGAAACGAAGTAATAGCTGTCTTCTATCCGGAAAACAAATTTGCTCAGGGAGATTATGAAGACTAG 1905 0.4588 MAEYEAEERYEEEVNGGGGGGGGVAGGEGGGVGEDLDTTHPFPSSASSPQLLDQSVSKSRHESRDYDRESSRSREKEREKDRKREKERHRDRNSERDRGDGEKERDHHRRDHRHRDRKDRERDRGRDRDRDDGDSHRSRDRDRRRDYDREERHKRRSRSRSISPSKDRSEHGTRSRSRSKRVSGFDLAPPASAMLAGAAAVTVWEKVHIKLHAVIWAMLGYLPHCADNGREPTSVAFMSKEESMHRFLVGLVRQITAPNPAIPGVLQNMFPMVTSQMQQFNALPMMPIQAMTQQATRHARRVYVGGLPPTANEQSVAIFFSQVMASIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLEGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTTQPKPEQESILMHAQQQIALQKLIFQPALVATKVVCLTNAVAPDELKEDEDYEEIIEDMRQECSKFGTLVNVVIPRPQPDGDLSGGVGKVFLEYVDIEGATKARTGLNGRKFGGNEVIAVFYPENKFAQGDYED 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00881 634 Gene3D - 295 396 IPR012677 -
Trre7g00881 634 Gene3D - 411 516 IPR012677 -
Trre7g00881 634 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 261 632 IPR006529 GO:0003723|GO:0005634|GO:0006397
Trre7g00881 634 FunFam U2 snRNP auxiliary factor large subunit 528 633 - -
Trre7g00881 634 CDD RRM1_U2AF65 299 381 - -
Trre7g00881 634 PANTHER RNA-BINDING PROTEIN 57 632 - -
Trre7g00881 634 SUPERFAMILY RNA-binding domain, RBD 421 624 IPR035979 GO:0003676
Trre7g00881 634 MobiDBLite consensus disorder prediction 116 181 - -
Trre7g00881 634 CDD RRM2_U2AF65 420 496 - -
Trre7g00881 634 FunFam U2 snRNP auxiliary factor large subunit 295 396 - -
Trre7g00881 634 MobiDBLite consensus disorder prediction 57 109 - -
Trre7g00881 634 FunFam U2 snRNP auxiliary factor large subunit 397 510 - -
Trre7g00881 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 557 617 IPR000504 GO:0003723
Trre7g00881 634 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 422 491 IPR000504 GO:0003723
Trre7g00881 634 Coils Coil 66 86 - -
Trre7g00881 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 420 498 IPR000504 GO:0003723
Trre7g00881 634 SUPERFAMILY RNA-binding domain, RBD 282 386 IPR035979 GO:0003676
Trre7g00881 634 SMART rrm1_1 301 379 IPR000504 GO:0003723
Trre7g00881 634 SMART rrm1_1 534 620 IPR000504 GO:0003723
Trre7g00881 634 SMART rrm1_1 421 494 IPR000504 GO:0003723
Trre7g00881 634 MobiDBLite consensus disorder prediction 40 56 - -
Trre7g00881 634 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 300 383 IPR000504 GO:0003723
Trre7g00881 634 MobiDBLite consensus disorder prediction 1 185 - -
Trre7g00881 634 CDD RRM3_U2AF65 532 620 - -
Trre7g00881 634 Gene3D - 528 633 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00881 Trre-Chr7 5893356 5899584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00881 422 613 Eukaryotic Initiation Factors Gene Family AT1G22760 26.943 2.63e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00881 K12837 - gmx:100793801 703.36