Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00855 ATGTCTCAATCTCAAGGTTCTTCTTCTTCTAATGATTCAGACATAGATAATAACGATTCCAACAGATCTGATGATGCTTCTGCAGTATCTGAATTGAAGCTTTACAGAGCTTTTATATTCTCTGTTCCTATTTTCTTCACTTTGATTCTTCTTTTTCTTTTCTATGTTTTTTATTTGAGACCAAGAAGAGTTGATTGGTCTTCTATTAGGATGAGGTCTGTTTCTGTTCTACAACATAATCATAATCATAACAATGCCATTTCAACTTCTGATTTGGGGTTGAAGAAAGAATTGAGAGAGATGCTTCCTATTATTGTGTACAATGAAAGCTTCTCTGTCAAAGATACACAATGCTCGGTATGTCTTTTGGACTACCAATCAGACGACAGACTTCAACAAATACCTGCATGTGGCCATACGTTTCACATGAGTTGCATTGATCTTTGGCTTTCCAGCCACAGCACCTGCCCTCTTTGCCGTTTGTCGCTACTACCTACTGTTAAATCTTCAACAGAAACATCCAATATGCAGGCCACAAGCAATGAAGAAATGGAGATGCAACAAAGCAATGAAGAAACATTAGCAATGGAACTCTCCGACTCAAGATCTACTAGGCATCAAGAAACCACTGACATTCAAAATGTCTCCGATGAAGTTGCAATCAGCGCTCCAAACATCAATGTTGAAGGGGAAAATGCGCGAAACAACCAATAG 714 0.3838 MSQSQGSSSSNDSDIDNNDSNRSDDASAVSELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSIRMRSVSVLQHNHNHNNAISTSDLGLKKELREMLPIIVYNESFSVKDTQCSVCLLDYQSDDRLQQIPACGHTFHMSCIDLWLSSHSTCPLCRLSLLPTVKSSTETSNMQATSNEEMEMQQSNEETLAMELSDSRSTRHQETTDIQNVSDEVAISAPNINVEGENARNNQ 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00855 237 MobiDBLite consensus disorder prediction 170 237 - -
Trre7g00855 237 Pfam Ring finger domain 117 160 IPR001841 -
Trre7g00855 237 SUPERFAMILY RING/U-box 102 166 - -
Trre7g00855 237 SMART ring_2 118 159 IPR001841 -
Trre7g00855 237 CDD RING-H2_EL5-like 117 160 - -
Trre7g00855 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 167 IPR013083 -
Trre7g00855 237 MobiDBLite consensus disorder prediction 170 197 - -
Trre7g00855 237 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Trre7g00855 237 PANTHER RING-H2 FINGER PROTEIN ATL16 32 215 IPR044600 GO:0016567|GO:0016740
Trre7g00855 237 FunFam RING-H2 finger protein ATL7 83 165 - -
Trre7g00855 237 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00855 Trre-Chr7 5721681 5724489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00855 31 165 C3H Transcription Factor Family AT4G10150 63.043 1.12e-64 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00855 K19039 - gmx:100794211 256.144