Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00850 ATGGAAAGAGAATTTGAAAGAGGTTACATTAAAAAAGGACCATGGAGTAATGAAGAAGATGAAGTGTTGTTGAAACATGTTAACAAGTATGGTCCTCGAGATTGGAGCTGCATTCGATCCAAAGGTCTTTTGCCACGAACCGGAAAATCTTGCCGGTTAAGATGGGTTAATAAGCTTAGACCTGACTTGAAAACAGGGTGCAAGTTTTCAGCAGAGGAGGAAAGAGTGGTGATTGAATTACAGGGGCAATTTGGAAACAGATGGGCAAAAATTGCTAAGTATTTGGAAGGAAGAACAGACAATGATGTGAAGAATTTCTGGAGTAGCAGGAAAAAAAAGATGGAGAGGAAATATCCAAGGACACCATCACCACCATCAAAGAAGCACAAAACCAAAGGAAAAACTATTCCTAATCAACTCAAAGTTCATAAGGTTCCTGAAAGTGGTTCCAATCAGCTGGATGTAAACCTTACTCATCCAATTTCTTTTATGGGAAACAAAGAAGTGTTCAAGATGATCAATCTTCCAGATTTGACAAAGCCAAACTTCCAAGATTTGAAAAGTGAACTTAATGCAGTTGAGCTTGAAGAAGTCACTCCACTTCACACAGTACCATCATTTGAGTCTTCATCAGGGTACAACTTTCCTCTACCCTCTGACTCACAAATGGATTTTCCACTATTTCCAGAGTGTCAGGACCTTGTTCAAGAGCCTTTTGATCCAAATTTTATGGACATGTTTGAGCAGAAAAAATGTTCAGAAAGTATGTGGAGTCAGAAGATTGGAACTAGGTTGCCAAGTCTTGGACTTGAAGGAACTTCTCAGAGTGGAAGTTCAAATTGTTCCTTTAAGGACATCCCAACTGAGATTTTTGAATACTTTGCTCAATAG 891 0.3895 MEREFERGYIKKGPWSNEEDEVLLKHVNKYGPRDWSCIRSKGLLPRTGKSCRLRWVNKLRPDLKTGCKFSAEEERVVIELQGQFGNRWAKIAKYLEGRTDNDVKNFWSSRKKKMERKYPRTPSPPSKKHKTKGKTIPNQLKVHKVPESGSNQLDVNLTHPISFMGNKEVFKMINLPDLTKPNFQDLKSELNAVELEEVTPLHTVPSFESSSGYNFPLPSDSQMDFPLFPECQDLVQEPFDPNFMDMFEQKKCSESMWSQKIGTRLPSLGLEGTSQSGSSNCSFKDIPTEIFEYFAQ 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00850 296 MobiDBLite consensus disorder prediction 110 134 - -
Trre7g00850 296 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Trre7g00850 296 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Trre7g00850 296 FunFam MYB transcription factor 12 64 - -
Trre7g00850 296 SMART sant 65 113 IPR001005 -
Trre7g00850 296 SMART sant 11 61 IPR001005 -
Trre7g00850 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 115 IPR017930 -
Trre7g00850 296 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Trre7g00850 296 FunFam Transcription factor GAMYB 67 137 - -
Trre7g00850 296 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Trre7g00850 296 Gene3D - 67 141 - -
Trre7g00850 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Trre7g00850 296 CDD SANT 14 59 IPR001005 -
Trre7g00850 296 CDD SANT 68 107 IPR001005 -
Trre7g00850 296 Gene3D - 11 64 - -
Trre7g00850 296 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Trre7g00850 296 PANTHER TRANSCRIPTION FACTOR DUO1 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00850 Trre-Chr7 5684412 5686323 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00850 4 116 MYB Transcription Factor Family AT3G60460 76.106 5.14e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre7g00850 Myb_DNA-binding 4.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00850 K09422 - gmx:121173231 393.66