Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00844 ATGGACCTTGATTTGAATCAGGAGCCTATGGATCAAACTAGTAGTAGTACATCAGTAGTTGCATTTGATTCTGTATTGGAAGAATTGGAGGCGGCGGAAGAAAATATACGGAATCGAATTGTACATCTCGAAGCAATTACTTCGAGAGCGAGGCAGCGTCAGAGGTTGCCGAGGGTGCAGACTCCTATTCAGATAACCAATTTTACAGGAGAAGTAGCAGCTGGAGATGGTGTTCAAGGCGAAGAAGGAAGGGTGGAGGTGGAGCAGAATGTTGTTGAGGAAAGAGTAGTTGAGAGTGTGAAAGGGGGAAAAAGGAAAAGTGCGCATTTAGTTGCGAAAGCTTTGGGGATTGAAGAGATTGATGATGGTAAAATGGAGGAGAGTAGTGGAAATTTTTTTGATTGTAATATTTGTTTGGATATTGCTAGAGATCCTGTTTTGACATGTTGTGGTCATTTGTTTTGTTGGCCGTGTTTTTATCAGTTGTCGTATGCGTATTCGAAAGCGAAGGAATGTCCTGTTTGTAAAGGAGAGGTTGCTGAATCGGGTATTATTCCGATTTATGGGAATGGAAATGGCGGTGGTGATCGTCAAATGGAAATGAAAGAAGCCGGTTTAAGGGTTCCTCCACGACCTAAGGCACCTAGAGTTGAGAGTCTTAGACAAAAGTTGATAAGCCGAGGAGCATCTTCTTCTTCTATTGTACAAAGCCTTCGACGGTTTCATAACCGAATTGGTGGATTTGGAGAGCATGTTCAGTTGGAAAGTTCTAATACAACAGCTGATAGAAATAATGGTTTGCTCGATCAATCTCGCTCGCAGACAGATAATAATCAACATCCTGGCTCTGAACAGGTTTCAAGGTTGCTGGGGCAAGGAGCTTCTTCATTTTCGATGCTTTCAACAGCATTAAATTCAGCAATGGATTCTGCAGAAAGATTAGTTCAGGACCTTGAATCATATATCAATGGTCGCGGAATAGGAGGAAGCAGAGAGCAAAATCCCCGTGCTGTTAATAGAAGTTCAACTTTTAGTGTTGCTGCTACAAACGGGTCAGAGAGTCGTGCTCCAGATGGTGTTGCCGTGACCAATTCTGCAACCGCAGCAGCTTCTGTGTCTCCTTTATCTAGTAATGTTGACAATATTTCTGCTATAGGTTCAGAATCGCAGACAACTGATAGAGACATTCAGATTAGTGCGCCAGACCCTTCTTCATCAAACGGCAGACGAAGAAATGGCGTTTCAGCACAAGTTTCAAATGAACCAACAAGAAGAAGACGCAGAAGAAGATTGAGATGA 1299 0.428 MDLDLNQEPMDQTSSSTSVVAFDSVLEELEAAEENIRNRIVHLEAITSRARQRQRLPRVQTPIQITNFTGEVAAGDGVQGEEGRVEVEQNVVEERVVESVKGGKRKSAHLVAKALGIEEIDDGKMEESSGNFFDCNICLDIARDPVLTCCGHLFCWPCFYQLSYAYSKAKECPVCKGEVAESGIIPIYGNGNGGGDRQMEMKEAGLRVPPRPKAPRVESLRQKLISRGASSSSIVQSLRRFHNRIGGFGEHVQLESSNTTADRNNGLLDQSRSQTDNNQHPGSEQVSRLLGQGASSFSMLSTALNSAMDSAERLVQDLESYINGRGIGGSREQNPRAVNRSSTFSVAATNGSESRAPDGVAVTNSATAAASVSPLSSNVDNISAIGSESQTTDRDIQISAPDPSSSNGRRRNGVSAQVSNEPTRRRRRRRLR 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00844 432 MobiDBLite consensus disorder prediction 325 360 - -
Trre7g00844 432 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 224 IPR013083 -
Trre7g00844 432 Pfam Zinc finger, C3HC4 type (RING finger) 134 180 - -
Trre7g00844 432 SUPERFAMILY RING/U-box 131 182 - -
Trre7g00844 432 ProSiteProfiles Zinc finger RING-type profile. 135 176 IPR001841 -
Trre7g00844 432 SMART ring_2 135 175 IPR001841 -
Trre7g00844 432 MobiDBLite consensus disorder prediction 387 420 - -
Trre7g00844 432 MobiDBLite consensus disorder prediction 252 286 - -
Trre7g00844 432 MobiDBLite consensus disorder prediction 334 360 - -
Trre7g00844 432 MobiDBLite consensus disorder prediction 387 432 - -
Trre7g00844 432 Coils Coil 26 46 - -
Trre7g00844 432 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 113 294 IPR045103 GO:0005783|GO:0006511|GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00844 Trre-Chr7 5645925 5647223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00844 128 371 C3H Transcription Factor Family AT3G58030 34.965 4.26e-39 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00844 - - cam:101488454 535.413