Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g00841 | ATGTTTCTAAGGGCAAGTACTGGAGACAGTTACCGTTTTAGCGCATCTAGTACGCCTAGCAATTCAAGTGGAGGAACTGATGGAGATGATATCGAATCACGATGCGATGTTTACATATGGGGAGAGGTTTTTGCAGACAAATTTCCTTCTAAGACAGATGTGTTGATCCCTAAGCTCTTAGAGTCAAAACTTTATCTTGATGTTCATAACATTGCATCTGGTGCGCATCACGTTGCTATAGTAAACAAGAGAGGAGAGGTTTTCACTTGGGGAAAGGAATCTGGAGGAAGACTCGGCCATGGAATTGATAAAGATTTTGACAAGCCTAATCTAGTTGAGTTTCTTGAAGATGTTATTTTGGATATTGTTGCATGTGGAGAGTTTCATACATGTGCTGTGTCTAAATCTGATGACTTTTTCACCTGGGGTGATGGTGCACATAATGTTGGACTTCTTGGACATGGAAATGGGGCTAGTCACTGGATACCAAAGAGTGTCAATGGCTTTTTGGATGGACTTCAAGTCGTATCTGTTGCATGTGGCACGTGGCATTCAGCATTGGCAACCTCAAATGGAAAACTGTTTACCTTTGGAGATGGAACATTTGGTGTGTTAGGCCACGGTGATCAAGAGAGTGTATTGTATCCAAAGGAAGTACAATTATTAAGCGGACTGAAGACTATGAAGGTTGCTTGCGGAGTATGGCACACTGCAGCTATTGTTGAGGTTGTTTTTCAATCTGGTTCAAATAATTCATCATGCAAACTCTTCACATGGGGTGACGGTGACAAATATCAATTAGGCCATGGAAACAAGGAAACATATCTGAAACCAACGCGTGTCTTGCCGCTTATTGAATATAATTTCCAGCAGATAGCATGTGGACACACCATGACTGTTGCTCTCACTACATCTGGTCATGTATTTGCAATGGGAAGCACGGAAAATGGTCAATTAGGAAATCCAAATTCTGCTGGAAAAGTACCTACTTTAGTTCAAGGTAAGTTGCTTGGTGAATTTGTTGAGGAAATATCATGCGGAGCACATCATGTTGCTGTTTTGACTTCAAAAAGTGAACTATATACATGGGGAAAAGGTTCTAATGGAAGATTAGGACATGGTGACACAGATGATAAAAAATCTCCTACACTTGTGGTAGCCTTGAAAGATAGGCATATAAAATATATCTCATGTGGTTCAAACTTTACATCTTGTATATGTATGCCTAAATCGGTCACTGGAACTGACCAATCTGTTTGCTTTGGTTGTAAACAAGCATTTGGTTTAACAAGAAAAAGATACAATTGTTATAATTGTGGATTGGTTTTCTGCTATACTTGTAGTTCTAAAAAGTCATTCAAAGCTGCACTGGCTCCAACATTTGAAAAACCTTATCGTGTATGTGATACTTGTTTTACTAAGCTTAAAGTTGTTGACATCAATGATTCTTCAAAGTTTAATGGAAAAATTACTCCTCATTGTTCCACAACTGGTAGGGAAGGATTGGACCAAAGTATTTTAAGGTCTACAAAAACTCTCTTCTCTTCTATAACTGAGCCAGTAAAATACCATGAAATAAGGAATAATGGAACTGAATGTGGTACTACTTTCGTAAGAGCTTCTTTAGTTCCATCTCTTTTGCAATTGAAAGATATTGCATTTCCAAGTTCATTGAGTTCTACTCAAAGTGTTTTGAAGCCTTCTACACCCCCTAGATCATCACAAAGTCCCACATGTAGATCAAGCCTTCCACCAGCTTCTGCTAATCCAAAAATTTCTGGTGTTCTTATCAATAGTTTGAGAAGAGCAAATTATGTTTTGATCCAAAGAGTCTCGGATTTGCAGAGACAAATTCAAGGTTTGAAGCAGATAAGCGACGTGAAAGATGTGGAACTTCAGAAGCTTAATAAAAAGGCTAAGGAAGCTATTGCATGGGCGGCAGTGGAATCTTCTTGTCATACAGAAACAAAAGAATTTATTAAATCCACTAAACGTCAGTTGAAGGAAGTGACTGAGAAGCTACCAATAGATATTCCAGAAACTAATATCTTGAGTACTATACACACTCAAGCTGAAGATTTTCTAAAAGAAATTTCAAAATCTGAAACATCAGAGTTGGAGTCCAAGCAACAGGAAGCACATGACATATCTGCTACAGACAGTGACTCTTCTAAACTGGAAAATATTAGTTTAGTGAAAGATGCTGACAGTGTAGAAGTTGACTCTTGTCTAGAAAAGTTAGTAGAGTCTTTTCAACAGAATGCACATGATATATCTACCTCGCCTAGTGGAACTTTTGAACTGCAAGATCATAGACTAGAACAAAATGCTGATATTTTAGGAGATGACCGTCGTCAAGATGAAGGAAATATCCATGACGAAATTAACAAACCAACTTTGGAGTCAAAGCAACAAAATTCACATGATATATCTACCCCGCAACGTGGAACTTTTGAACTGCAAGATCATAAACTAGAACAAAATGCTGATGATGTTTTAAGAGATGACCGTTGTCAAGATGAAGGAAATATTCTTGACGAAATTAACAAACCAACATTGGAGTCAAAGCAACAAAATTCACCTGATATAACTACCTCAGATAGTGACACTTCTAAACTACAAGTACTCATACATGAAAAAATTGATAAGACTGCAAGGGTTGATCAATCTGAGGGTGGAATAAATGTCCGGCAAGAAAGTAATGGATCGACAATATCTATTGTTGGAGAAATGTTATCACCCCAAAACTCAGGAAATGGTTCAATATCACCACTGGACAGTTCAAGAGATGAGAGACTACAAGAAACACAAGTCTTTGAAAAATTTGAGTCTGGTGTTTATGTGTTAGTCGTGCTACGGGATGATGGAATCAAAATTTTTAAGAGAGTCAAATTCAGTAAGCGAAGGTTCACTGAAAGACAAGCAGAAGAATGGTGGAGCCATAACAAAGGTAGGGTTCTTAGCAAATACTGTCCAATCCATCAAAAGTTAAATGAACCATGTAATAACATTACACCAAATGTTAAAGAAAATATTGAGTCATGTCCTTCTTAG | 3054 | 0.3779 | MFLRASTGDSYRFSASSTPSNSSGGTDGDDIESRCDVYIWGEVFADKFPSKTDVLIPKLLESKLYLDVHNIASGAHHVAIVNKRGEVFTWGKESGGRLGHGIDKDFDKPNLVEFLEDVILDIVACGEFHTCAVSKSDDFFTWGDGAHNVGLLGHGNGASHWIPKSVNGFLDGLQVVSVACGTWHSALATSNGKLFTFGDGTFGVLGHGDQESVLYPKEVQLLSGLKTMKVACGVWHTAAIVEVVFQSGSNNSSCKLFTWGDGDKYQLGHGNKETYLKPTRVLPLIEYNFQQIACGHTMTVALTTSGHVFAMGSTENGQLGNPNSAGKVPTLVQGKLLGEFVEEISCGAHHVAVLTSKSELYTWGKGSNGRLGHGDTDDKKSPTLVVALKDRHIKYISCGSNFTSCICMPKSVTGTDQSVCFGCKQAFGLTRKRYNCYNCGLVFCYTCSSKKSFKAALAPTFEKPYRVCDTCFTKLKVVDINDSSKFNGKITPHCSTTGREGLDQSILRSTKTLFSSITEPVKYHEIRNNGTECGTTFVRASLVPSLLQLKDIAFPSSLSSTQSVLKPSTPPRSSQSPTCRSSLPPASANPKISGVLINSLRRANYVLIQRVSDLQRQIQGLKQISDVKDVELQKLNKKAKEAIAWAAVESSCHTETKEFIKSTKRQLKEVTEKLPIDIPETNILSTIHTQAEDFLKEISKSETSELESKQQEAHDISATDSDSSKLENISLVKDADSVEVDSCLEKLVESFQQNAHDISTSPSGTFELQDHRLEQNADILGDDRRQDEGNIHDEINKPTLESKQQNSHDISTPQRGTFELQDHKLEQNADDVLRDDRCQDEGNILDEINKPTLESKQQNSPDITTSDSDTSKLQVLIHEKIDKTARVDQSEGGINVRQESNGSTISIVGEMLSPQNSGNGSISPLDSSRDERLQETQVFEKFESGVYVLVVLRDDGIKIFKRVKFSKRRFTERQAEEWWSHNKGRVLSKYCPIHQKLNEPCNNITPNVKENIESCPS | 1017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 306 | 357 | IPR000408 | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 850 | 869 | - | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 9 | 28 | - | - | |
| Trre7g00841 | 1017 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 936 | 990 | IPR013591 | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 358 | 409 | IPR000408 | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 910 | 927 | - | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 701 | 724 | - | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 844 | 869 | - | - | |
| Trre7g00841 | 1017 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 28 | 664 | - | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 414 | 476 | IPR017455 | - | |
| Trre7g00841 | 1017 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 230 | 240 | IPR000408 | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | BRX domain profile. | 936 | 991 | IPR013591 | - | |
| Trre7g00841 | 1017 | Pfam | FYVE zinc finger | 415 | 475 | IPR000306 | GO:0046872 | |
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 85 | 136 | IPR000408 | - | |
| Trre7g00841 | 1017 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 6 | 245 | - | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 910 | 929 | - | - | |
| Trre7g00841 | 1017 | SMART | fyve_4 | 408 | 477 | IPR000306 | GO:0046872 | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 560 | 586 | - | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 85 | 133 | IPR000408 | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 140 | 187 | IPR000408 | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 256 | 302 | IPR000408 | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 191 | 240 | IPR000408 | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 359 | 406 | IPR000408 | - | |
| Trre7g00841 | 1017 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 305 | 354 | IPR000408 | - | |
| Trre7g00841 | 1017 | SUPERFAMILY | FYVE/PHD zinc finger | 413 | 476 | IPR011011 | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 192 | 243 | IPR000408 | - | |
| Trre7g00841 | 1017 | Gene3D | - | 13 | 252 | IPR009091 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 353 | 374 | IPR000408 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 295 | 313 | IPR000408 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 137 | 153 | IPR000408 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 87 | 103 | IPR000408 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 178 | 194 | IPR000408 | - | |
| Trre7g00841 | 1017 | PRINTS | Chromosome condensation regulator RCC1 signature | 194 | 208 | IPR000408 | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 254 | 305 | IPR000408 | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 795 | 814 | - | - | |
| Trre7g00841 | 1017 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 137 | 191 | IPR000408 | - | |
| Trre7g00841 | 1017 | Gene3D | - | 253 | 411 | IPR009091 | - | |
| Trre7g00841 | 1017 | SUPERFAMILY | RCC1/BLIP-II | 34 | 410 | IPR009091 | - | |
| Trre7g00841 | 1017 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 412 | 487 | IPR013083 | - | |
| Trre7g00841 | 1017 | MobiDBLite | consensus disorder prediction | 800 | 814 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g00841 | Trre-Chr7 | 5630638 | 5635968 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g00841 | 935 | 990 | Major Intrinsic Protein MIP | AT1G31880 | 35.714 | 3.53e-07 | 51.6 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g00841 | - | - | mtr:11425711 | 1212.98 |