Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00823 ATGAAAAGTCATCATCATCATCATAATCTTCATTCTTCCTTCACTTCTAATAATAATTCCATTCAACCCTTAAGCTCAAATAATCAATTATCAAAAGCTATGGCAATATCACCCCAAACATTCCCAACAACTAAACGACCACCTTCAGAAACGTCGTCGTTTATTACTCCAAACTTAACCAATTTCAATCTTCTTCACTCTCTATTACACCTCACACAACAAATATGTTCATTAAACGCAGCACCTTGGTGTCGTTTTCTCTTAAACAAAATTTCCTCTTCAACAATCCATAAAACGCATCTACTAGAAATGTATATTGTATTGCATAGGATTAAAAAGTTGATTGAAGATTGTTCTAATGGAAGTAAATTTTCTGTTCTGATGCAAATTGAAACTGTTGCTGATAATTTCAATAAACTTACTGGTGAACTATTGACGCTTCTTGATGTTTTTCCGATTCATGAGATGAACTTAAACGATGACGTTTTGGAGATTATTGTTTTGATCAGAAAACAGTGTTCAGAATCGAAGAAGAATAAGCTTGGAGAAGAACAGATTAATCTCCGAAACGACGTCGTTTTTGTGCTTGAAGGTATCAAGAGAGAGATTGTTCCGAATGAAGCAAAGCTAGCTTCGATTTTTGAGAAATTGGAGATTAGTGATTCTTCAAGTTGCAGAAGTGAAATTGAGAATCTGCAAGAAGAAATTCAAAATCGAAACGAAGAACAATCGAAATCTGAGATCGTTTCATTGATCGGACTAGTTCGTTATGCGAAGTGTGTTCTCTTCGGAGCATCAACGCCGTCGTCGAGAAATGAGACTCTACGGCGGAATCAGTCGTTGGAGATTGTTGTTCCGTCGGATTACCGGTGTCCGATAAGTCTTGAACTGATGCGGGATCCTGTCGTCGTGGCAACAGGACAGACGTACGATCGTGGCTCAATCAAATTATGGATGGATTCTGGACACAACACGTGTCCTAAAACAGCTTTGGAAGCAACGAGAATGACGGCGACGTTTTTAGTCAACAAGTTGACTAATGGTTGTTTAGTTTCAGAGTCACGAGCTATGGAAGAAACGAATGCAGTTGTGTATGAGCTTCGGGTGTTGGCAAAAACAGATTCAGAGAGCCGAGCCTGTATTGCTGAAGCGGGAGCTATAGAGATTTTGGTTCGGTTTTTAAGTTATGAAGTTGGTTCACAACACCCGAGCCTACAGGTTAATGCTGTGACTACGATATTAAATCTTTCGATACTTGAAGCGAATAAGACAAGGATAATGGAAATTGACGGTGTGTTAAATGGAGTAGCGGAGGTTTTACGATCGGGTGCCACGTGGGAGGCGAAAGCAAATGCGGCTGCTACGATGTTTAGTTTAACTGGAGTGGTTGTTTTTAGAAAGCGGTTAGGGAGGAAGACACGTGTCGTGAGTGGATTGGTTGAGTTGGCAAAGAGTGGGCCCGAGGGTGCGAAAAGAGATGCACTTGCGGCTATTTTGAATTTAGCTGCGGACCGTGAGACAGTGGCGAGGTTGGTTGAGAGTGGGGCGGTGGAAATGACGGCAGGGATTATGGCAGTGATGCCAGAGGAGGCGGTGACGATACTTGAAGCAGTGGTGAAGCGTGGAGGATTGGTAGCTGTCGCGGCGGCTTTTGTGGGGATAAAGAAATTGGGGACGGTGTTGAGGGAGGGATCAGAGAGGGCAAGAGAGAGTGCCGCGGCGACGCTTGTGACAATGTGTAGGAAAGGTGGATCGGAGATTGTGGCGGAACTAGCTGGGATTCATGGTGTTGAAAGAGTGATTTGGGAGTTGATGGCAGTGGGTAGTGTTAGAGGCAGGAGGAAGGCGGCGACATTGTTGAGGATTTTGCGGCGGTGGGCTGCGGGTTTGGACGGTGGCGAAACGGAAGGGTTTACATCAACAAACACTTTTGTTAGTACATCAACTACTGTGGTTGTTCCAACTCCTACTTCAATAGCACAGTAA 1986 0.4345 MKSHHHHHNLHSSFTSNNNSIQPLSSNNQLSKAMAISPQTFPTTKRPPSETSSFITPNLTNFNLLHSLLHLTQQICSLNAAPWCRFLLNKISSSTIHKTHLLEMYIVLHRIKKLIEDCSNGSKFSVLMQIETVADNFNKLTGELLTLLDVFPIHEMNLNDDVLEIIVLIRKQCSESKKNKLGEEQINLRNDVVFVLEGIKREIVPNEAKLASIFEKLEISDSSSCRSEIENLQEEIQNRNEEQSKSEIVSLIGLVRYAKCVLFGASTPSSRNETLRRNQSLEIVVPSDYRCPISLELMRDPVVVATGQTYDRGSIKLWMDSGHNTCPKTALEATRMTATFLVNKLTNGCLVSESRAMEETNAVVYELRVLAKTDSESRACIAEAGAIEILVRFLSYEVGSQHPSLQVNAVTTILNLSILEANKTRIMEIDGVLNGVAEVLRSGATWEAKANAAATMFSLTGVVVFRKRLGRKTRVVSGLVELAKSGPEGAKRDALAAILNLAADRETVARLVESGAVEMTAGIMAVMPEEAVTILEAVVKRGGLVAVAAAFVGIKKLGTVLREGSERARESAAATLVTMCRKGGSEIVAELAGIHGVERVIWELMAVGSVRGRRKAATLLRILRRWAAGLDGGETEGFTSTNTFVSTSTTVVVPTPTSIAQ 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00823 661 SMART arm_5 374 418 IPR000225 GO:0005515
Trre7g00823 661 ProSiteProfiles U-box domain profile. 284 357 IPR003613 GO:0004842|GO:0016567
Trre7g00823 661 PANTHER U BOX DOMAIN-CONTAINING 98 624 - -
Trre7g00823 661 MobiDBLite consensus disorder prediction 1 22 - -
Trre7g00823 661 Gene3D - 341 551 IPR011989 -
Trre7g00823 661 Pfam U-box domain 285 334 IPR003613 GO:0004842|GO:0016567
Trre7g00823 661 Coils Coil 222 249 - -
Trre7g00823 661 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 385 431 IPR000225 GO:0005515
Trre7g00823 661 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 340 IPR013083 -
Trre7g00823 661 Pfam Armadillo/beta-catenin-like repeat 374 417 IPR000225 GO:0005515
Trre7g00823 661 SUPERFAMILY RING/U-box 281 333 - -
Trre7g00823 661 CDD RING-Ubox_PUB 286 329 IPR045210 -
Trre7g00823 661 SMART Ubox_2 288 350 IPR003613 GO:0004842|GO:0016567
Trre7g00823 661 SUPERFAMILY ARM repeat 360 623 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00823 Trre-Chr7 5501145 5503367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00823 42 659 U-box Gene Family AT5G01830 49.493 0.0 604
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00823 - - tpra:123922727 1111.29