LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g00819	ATGTATAAGGGAAGAATAGGAGGCAAAGCTCATCCTGGATATGTTGAAACTGATCCTTCAGGTCGATATGGACGTTTTAGGGATGTCCTTGGCAAAGGAGCAATGAAGGTAGTTTATAGGGCATTTGATGAAATCCTAGGAATAGAAGTGGCTTGGAACCAAATCAAGCTTGATGATGTCTTTCATTCACCGGACCAACTTCAACGCCTCTATTCAGAGGTTCATCTCCTAAAAAACTTGGATCATGATTCTATCATTACTTTCCATGGTACTTGGATTGATTCTGATTGTAGAACTTTCAACTTCATCACTGAATTGTTCACCTCCGGAACCCTAAGAGAGTATAGAAAGAAGTACCCTCGTGTAGATATGAGAGCAATAAAGAATTGGGCTCGCCAGATTCTAAGTGGTTTGGAGTATTTGCATAGCCATGATCCTCCTGTGATACATAGAGACCTAAAGTGTGATAATATATTTGTTAATGGCCATATGGGTAAACTCAAGATTGGTGATTTAGGCCTTGCAGCAATTCTTCGTAGTTCACAACATGCACACAGTGTCATAGGTACACCAGAGTTTATGGCACCAGAATTGTATGAAGAGGAATATACTGAGTTGGTAGACATATACTCTTTTGGCATGTGTATGATTGAGTTGTTCACTTCTGAGTTCCCATATAGTGAATGCTCCAACCCAGCTCAAATATACAAGAAAGTTACATCTGGGAAACTACCAGCTGCATTTTACAAGATCCAAGATTTAGAAGCCCAAAAGTTTGTTGGGAAATGTTTGGCAAATGTAACAGTGAGGTTGTCAGCAAAAGAGCTTTTGTTGGACCCATTTTTAGCCACGGCCCAATGTGATTCACCATTGCCTAGTCCAACATTACCTAGCAAACATTCTCAAAAACTCAATTTCAATGCAACAATGGCCAAAGAGCAACCTTCATTGAATGTTCAAACAAAGAGCACACATATGACAATCACAGGGACTATGAATGAAGAGGATGACAATGTTTTCCTTAAAGTCAAAATTTCAAACAAAAATGGGCACACAAGAAACATATACTTTCCATTTGACATAAGAAATGACACTGCAATTGAGGTTGCAAATGAGATGGTCAAAGAACTAGAAATTATTGACTTAGAACAACAAGAGATTGCTGAAATGATTGAAGAAGAAATATCAACTATAGTTCCAACATGGAGGGGTTTTGACACTTCTAAGTATCAAAGACATCATAGTTTTAATTATGGAGAAGAGGATGATATTAGTAATCATAATCCTTTCTTCTCACCATCTTCTCGTTCTTCATCTCATGGTTCTCTTCCTATGTTTTGTGCTTCCTTCAACAACAATACACACCTTTGTGGGAACCATTATCCTTTTCCTCAAGATTGGTCACAAGATGATCACCAATACATGAATGATGATGCAAGCTCTCAAAGCTCAATCAATTCCTACAAGTGTTTCAATTTCCATTGCAACGACTCATGCAATGAAGATGAACAAGGTTCAACTCATATAGTAGGAGAAGAACCCTTTTGTTCCAATCAAAAGGGTAACAACAAATCAACAAGATTTTGTCCTCCAGAAGAAATGTTGGAGGTTGGTTTCATCAAACAGTTTTCCAATATGAGAATGAATTCTCACACTCACACTCATAAGAATCATCATGGACCAAACAATAGATGTCCAAGTCCAAGGTTGACAAGGATTAATTCATGTCTTGATGTGAAGAAACAACAACGATCATTGATGGAAGAGATGCAAAAGAGAAGGGTGTTCAATACAGTGAGTGCTATTGAGAATATTGGATTTCAAAATCCAGAAGGAGATGGATGTTTTTCTTGTTGA	1857	0.378	MYKGRIGGKAHPGYVETDPSGRYGRFRDVLGKGAMKVVYRAFDEILGIEVAWNQIKLDDVFHSPDQLQRLYSEVHLLKNLDHDSIITFHGTWIDSDCRTFNFITELFTSGTLREYRKKYPRVDMRAIKNWARQILSGLEYLHSHDPPVIHRDLKCDNIFVNGHMGKLKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEEYTELVDIYSFGMCMIELFTSEFPYSECSNPAQIYKKVTSGKLPAAFYKIQDLEAQKFVGKCLANVTVRLSAKELLLDPFLATAQCDSPLPSPTLPSKHSQKLNFNATMAKEQPSLNVQTKSTHMTITGTMNEEDDNVFLKVKISNKNGHTRNIYFPFDIRNDTAIEVANEMVKELEIIDLEQQEIAEMIEEEISTIVPTWRGFDTSKYQRHHSFNYGEEDDISNHNPFFSPSSRSSSHGSLPMFCASFNNNTHLCGNHYPFPQDWSQDDHQYMNDDASSQSSINSYKCFNFHCNDSCNEDEQGSTHIVGEEPFCSNQKGNNKSTRFCPPEEMLEVGFIKQFSNMRMNSHTHTHKNHHGPNNRCPSPRLTRINSCLDVKKQQRSLMEEMQKRRVFNTVSAIENIGFQNPEGDGCFSC	618

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g00819	618	Gene3D	-	338	403	-	-
	Trre7g00819	618	FunFam	Probable serine/threonine-protein kinase WNK1	9	105	-	-
	Trre7g00819	618	SMART	serkin_6	24	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g00819	618	CDD	STKc_WNK	22	282	-	-
	Trre7g00819	618	ProSiteProfiles	Protein kinase domain profile.	24	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g00819	618	Pfam	Protein kinase domain	28	282	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre7g00819	618	SUPERFAMILY	Protein kinase-like (PK-like)	26	325	IPR011009	-
	Trre7g00819	618	Gene3D	Transferase(Phosphotransferase) domain 1	107	288	-	-
	Trre7g00819	618	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	148	160	IPR008271	GO:0004672\|GO:0006468
	Trre7g00819	618	Gene3D	Phosphorylase Kinase; domain 1	9	105	-	-
	Trre7g00819	618	FunFam	probable serine/threonine-protein kinase WNK9	107	287	-	-
	Trre7g00819	618	PANTHER	SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED	13	589	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g00819	Trre-Chr7	5455534	5461366	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g00819	13	426	MAP Kinase Kinase Kinase	AT3G51630	68.193	0.0	581

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	WNK_NRBP	Trre7g00819		Pkinase	6.8e-48	CL0016