Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00798 ATGGAGTCAAGGTGTTGCATGAACGTGTTATGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTACTTCGATCCGGTGAATTCGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCACAGCTTGAAATACTTGATACTGGTGGTGTAAGCTGTATAACCTGCACAAGTAATTCAGGACTTCAACCAATTACTGGTAATGAAAAGCCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTATGCAGCAATACATATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTTGGGAATTATACAGAAAATGATGGACTGAGGTGCTGGCTCAAACCTCGCAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTCGGAGAATTTGGAAGCACTTTGGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTCCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGGCGCAAACAAATTTGAGTACGACCCTTGCCGCTCCTTTGGAAAATTCGAATCCCTTTCACAATGTCCTTGTTGATGAAAGAGAACAAAGCAAAATGTCACCTCCGCTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTTCAGGCTTAGAAGCAAATGTAGGTATGGTATCCCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGAGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGATTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTCTCCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCCGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACGCCCTGTATCCAGTCTATGCAACTACAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTCAAACTTACTTGGGAAGAGGCTCAAGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGGAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAAGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACATGAATCTTCTGGTCTTGATGCTTTGGCAAATGCTGTTGTACTTGGAGATGATGCAAGTGAATCTGGTACGACGCCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACTTGTAACGTCTGCATGACAGTTAAGCGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGGCCAAGGACGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCAACTTCAGATAATGAAGCAAGGTTGCCAAATGAGTTGGATTCAAAGATTCAAGACCAAGTGGCTGAAGCTGCCACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAGTTCATGAACAGGAAGGCAGTCCTGAAGAAAACAGCGGGCAAGACCGAGACCAAAACAATTCACTTTCTTGA 2622 0.4378 MESRCCMNVLCGTSTSIRWRKGWLLRSGEFADLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSNSGLQPITGNEKPNESETAKVKHVSMQQYISLANQLNARGMQVGNYTENDGLRCWLKPRNVDMDGPSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTPKGENYKAGDMQDIYESLAQTNLSTTLAAPLENSNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSSGLEANVGMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGDSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALEHESSGLDALANAVVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRAKDESEVDSTSRHLTPVDGSTSDNEARLPNELDSKIQDQVAEAATGQLDLNCQPDRDDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVVHEQEGSPEENSGQDRDQNNSLS 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00798 873 Pfam CW-type Zinc Finger 555 597 IPR011124 GO:0008270
Trre7g00798 873 SMART B3_2 321 421 IPR003340 GO:0003677
Trre7g00798 873 Pfam B3 DNA binding domain 321 420 IPR003340 GO:0003677
Trre7g00798 873 MobiDBLite consensus disorder prediction 705 758 - -
Trre7g00798 873 SUPERFAMILY DNA-binding pseudobarrel domain 318 420 IPR015300 -
Trre7g00798 873 CDD B3_DNA 319 420 IPR003340 GO:0003677
Trre7g00798 873 Gene3D - 299 426 IPR015300 -
Trre7g00798 873 FunFam B3 domain-containing transcription repressor VAL1 299 426 - -
Trre7g00798 873 MobiDBLite consensus disorder prediction 723 737 - -
Trre7g00798 873 Gene3D - 553 609 - -
Trre7g00798 873 ProSiteProfiles B3 DNA-binding domain profile. 321 422 IPR003340 GO:0003677
Trre7g00798 873 MobiDBLite consensus disorder prediction 820 873 - -
Trre7g00798 873 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 825 - -
Trre7g00798 873 ProSiteProfiles Zinc finger CW-type profile. 550 600 IPR011124 GO:0008270
Trre7g00798 873 MobiDBLite consensus disorder prediction 738 753 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00798 Trre-Chr7 5275553 5282683 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00798 1 848 B3 DNA Binding Superfamily AT4G32010 50.996 0.0 819
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g00798 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00798 K09287 - gmx:100778833 1506.89