Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00796 ATGGAGTCAAGGTGTTGCATGAACGTGTTATGTGGTACATCTACGTCGATTCGGTGGCGTAAAGGTTGGCTACTTCGATCCGGTGAATTCGCCGATCTATGTGATAAGTGCGGTTCTGCTTATGATCAATCGGCATTTTGTGATATTTTCCATGCAAAAGATTCTGGTTGGAGAGAGTGTACTTCATGTGGCAAGCGTCTCCATTGTGGATGTGTTGCTTCAAAGTCACAGCTTGAAATACTTGATACTGGTGGTGTAAGCTGTATAACCTGCACAAGTAATTCAGGACTTCAACCAATTACTGGTAATGAAAAGCCTAATGAATCAGAGACAGCAAAGGTAAAACATGTCAGTATGCAGCAATACATATCTCTGGCTAACCAATTAAATGCAAGGGGTATGCAAGTTGGGAATTATACAGAAAATGATGGACTGAGGTGCTGGCTCAAACCTCGCAATGTTGATATGGATGGACCTTCTACAGAAATCAAACCAGAAGTTTTACCCTCTGTCGGAGAATTTGGAAGCACTTTGGTATCACAATTTCATCGTGAGTCAAATGGATCGTCTAGGACTCCCAAAGGAGAGAATTATAAGGCAGGCGACATGCAAGATATATATGAATCACTGGCGCAAACAAATTTGAGTACGACCCTTGCCGCTCCTTTGGAAAATTCGAATCCCTTTCACAATGTCCTTGTTGATGAAAGAGAACAAAGCAAAATGTCACCTCCGCTTCTATTGGCGTCTAGATCTCGCCATCTTTTACCTAAACCCCCTAGGCCAACTCTCTCTTCAGGCTTAGAAGCAAATGTAGGTATGGTATCCCAGGTTCGTATAGCAAGGCCTCCCGCCGAAGGACGAGGAAGGAATCAGTTGCTTCCGCGATATTGGCCTAGAATTACAGATCAAGAGTTGCAGCAAATATCGGGAGAGTATCCAACATTGTATTCAAATTCCACCATCGTGCCACTCTTTGAAAAGATGCTTAGCGCAAGTGATGCTGGTCGAATTGGTCGCTTAGTTCTCCCAAAAGCATGTGCTGAAGCATATTTCCCTCCTATCTCTCAACCCGAGGGCCTTCCTTTGCGAATCCAGGATGTGAAAGGAAAAGAATGGATGTTTCAATTTAGATTTTGGCCAAATAATAACAGCAGGATGTATGTTTTAGAAGGCGTAACGCCCTGTATCCAGTCTATGCAACTACAAGCTGGGGATACTGTAACATTTAGCCGTATGGACCCTGAGGGGAAACTTATAATGGGGTTCAGGAAGGCAACAAATTCTGCTTCAGTACAGGAAACTTTTCCGTCTAATAAGCCCAATGGTTCTCATTCAAGTGAAACTTCCTATTCTGGTGTTTATGAGAATTTACCTATATTAAGTGGTTACTCTGGCCTTCTTCAGTCTCAAAAGGGATGTTCAGAAACCCACCTAAATGTGCTGTCTAAAAAGTGGAACTCAGTTGGTGGTGACATGGATTGGCATAATGTAGAAATGCCCGAAAGCAGGAAAAGAGATGCCTTGTCTTTGCCACCTGTGCTGGTTCCCGAGAAGAAAAGAACTCGGAATATTGGGTCAAAAAGTAAGAGGTTGCTTATTGATAGCCAGGATGCACTGGAGCTCAAACTTACTTGGGAAGAGGCTCAAGATTTACTTCGTCCACCTCCAGAAGTTAAGCCAAGTGTTGTCATGATTGAGGATCACTTATTTGAAGAATATGAAGAACCTCCTGTCTTTGGGAAGAAGAGTATTTTTGTGGTACGATCTAATGGGATAAATGAGCAGTGGACACAGTGTGATAGTTGCTTAAAATGGCGGAAGTTACCAGTTGATGTACTTATTCCCCCTAAGTGGACGTGTATGGAGAATTTTTGGGATCAAAGCAGGTGTTCATGTGCTGCTCCCAATGAATTGAACCCAAGAGAACTGGATAATCTTTTGAGAATGAACAAAGAATTCAAGAAACAAAGACTAGCAGCAGCAAGCCAGAGGCCAGCTCTGGAACATGAATCTTCTGGTCTTGATGCTTTGGCAAATGCTGTTGTACTTGGAGATGATGCAAGTGAATCTGGTACGACGCCAGTCATGACCACTACAAAACATCCTCGTCATAGACCTGGGTGCTCCTGCATTGTCTGTATCCAGCCACCAAGTGGGAAGGGCAAACACAAACCTACATGCACTTGTAACGTCTGCATGACAGTTAAGCGTCGGTTTAAAACCCTGATGATGCGAAAGAAGAAACGTCAATCTGAGCGTGAAGCTGAGATTGCTCAGAAAAATCAGCTATCATATAGGGCCAAGGACGAATCAGAAGTAGACAGCACCTCTCGACATTTAACTCCAGTTGATGGTTCAACTTCAGATAATGAAGCAAGGTTGCCAAATGAGTTGGATTCAAAGATTCAAGACCAAGTGGCTGAAGCTGCCACGGGACAATTAGACTTGAATTGCCAACCGGACCGGGATGACATGCAAGCTGGACCAAACACTCTGAGCATGATGACTCTTCTTGAAGAAGCAAATCTCCCATTGGAGACATACCTGAAGCAAAATGGTCTTTCTAGCTTGATATCAGAGCAGCAAACAAATTCAGCTTCAAATGTGCAGGCACAAACAACCAATGAGAGTGAGGGAAGACAAAATGAGGATTGCAATACTGCTTCTGTAGTTCATGAACAGGAAGGCAGTCCTGAAGAAAACAGCGGGCAAGACCGAGACCAAAACAATTCACTTTCTTGA 2745 0.4346 MESRCCMNVLCGTSTSIRWRKGWLLRSGEFADLCDKCGSAYDQSAFCDIFHAKDSGWRECTSCGKRLHCGCVASKSQLEILDTGGVSCITCTSNSGLQPITGNEKPNESETAKVKHVSMQQYISLANQLNARGMQVGNYTENDGLRCWLKPRNVDMDGPSTEIKPEVLPSVGEFGSTLVSQFHRESNGSSRTPKGENYKAGDMQDIYESLAQTNLSTTLAAPLENSNPFHNVLVDEREQSKMSPPLLLASRSRHLLPKPPRPTLSSGLEANVGMVSQVRIARPPAEGRGRNQLLPRYWPRITDQELQQISGEYPTLYSNSTIVPLFEKMLSASDAGRIGRLVLPKACAEAYFPPISQPEGLPLRIQDVKGKEWMFQFRFWPNNNSRMYVLEGVTPCIQSMQLQAGDTVTFSRMDPEGKLIMGFRKATNSASVQETFPSNKPNGSHSSETSYSGVYENLPILSGYSGLLQSQKGCSETHLNVLSKKWNSVGGDMDWHNVEMPESRKRDALSLPPVLVPEKKRTRNIGSKSKRLLIDSQDALELKLTWEEAQDLLRPPPEVKPSVVMIEDHLFEEYEEPPVFGKKSIFVVRSNGINEQWTQCDSCLKWRKLPVDVLIPPKWTCMENFWDQSRCSCAAPNELNPRELDNLLRMNKEFKKQRLAAASQRPALEHESSGLDALANAVVLGDDASESGTTPVMTTTKHPRHRPGCSCIVCIQPPSGKGKHKPTCTCNVCMTVKRRFKTLMMRKKKRQSEREAEIAQKNQLSYRAKDESEVDSTSRHLTPVDGSTSDNEARLPNELDSKIQDQVAEAATGQLDLNCQPDRDDMQAGPNTLSMMTLLEEANLPLETYLKQNGLSSLISEQQTNSASNVQAQTTNESEGRQNEDCNTASVVHEQEGSPEENSGQDRDQNNSLS 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00796 914 MobiDBLite consensus disorder prediction 779 794 - -
Trre7g00796 914 ProSiteProfiles Zinc finger CW-type profile. 591 641 IPR011124 GO:0008270
Trre7g00796 914 ProSiteProfiles B3 DNA-binding domain profile. 326 427 IPR003340 GO:0003677
Trre7g00796 914 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 3 866 - -
Trre7g00796 914 MobiDBLite consensus disorder prediction 431 450 - -
Trre7g00796 914 FunFam B3 domain-containing transcription repressor VAL1 299 431 - -
Trre7g00796 914 MobiDBLite consensus disorder prediction 746 799 - -
Trre7g00796 914 MobiDBLite consensus disorder prediction 861 914 - -
Trre7g00796 914 SUPERFAMILY DNA-binding pseudobarrel domain 323 425 IPR015300 -
Trre7g00796 914 CDD B3_DNA 324 425 IPR003340 GO:0003677
Trre7g00796 914 Pfam CW-type Zinc Finger 596 638 IPR011124 GO:0008270
Trre7g00796 914 Gene3D - 299 431 IPR015300 -
Trre7g00796 914 Pfam B3 DNA binding domain 326 425 IPR003340 GO:0003677
Trre7g00796 914 Gene3D - 594 650 - -
Trre7g00796 914 MobiDBLite consensus disorder prediction 764 778 - -
Trre7g00796 914 SMART B3_2 326 426 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00796 Trre-Chr7 5275553 5282683 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00796 1 889 B3 DNA Binding Superfamily AT4G32010 48.658 0.0 797
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre7g00796 B3 1.4e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00796 K09287 - gmx:100778833 1585.47