Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00790 ATGGATACTGTTCTTCATTGCATGATTTCTTTTGTAATACTTTATTCTCTTATGTTAACCCCTTGTTATGGCCTAAACCCTAAATTGTTTAATGTCTCTCAAATTCAAAGTGATAATAATGAATGGCAAATGGCAATAGCTACATGGTATGGACCACCAGATGGTGCTGGATCGGATGGTGGTGCATGTGGATATGTTGATAGTGTAGAGAACCCTCCACTTAATAAAATGATATCAGCTGGAGGTCCATCTCTTTTTGATGGAGGCAAAGGATGTGGTGCTTGTTATGAGGTGAAATGCAATGAAAATAGTGCATGCTCAGGAAATGCCATGACTGTGATGATAACTGATAATTGCCCTGAATGTGTAGAGTCTGCCCATTTTGATCTAAGTGGAACTGCCTTTGGTTCCATTGCAAAACAAGGTCAAGCTCAAAATCTTCGCAATGCTGGAAAAATTAATATTCAATACAGAAGGGTTGCATGCTCTTTTGGGAAATCAATAGTCTTTAGAGTTGATAGTGGATCGAACCCATACTATTTTGCAACAGAAATAGAATATGAAAATGGAGATGGTGACATTGTAGATGTTGAATTGAGCCAATCAAATACATGGCTTCCAATGCAACGTTCTTGGGGTGCAAGATGGGCTTTGAACAAAGGTTCAATATTGCAAGCTCCATTTTCTATTAAGCTCACAGAAAGTGGAAATGGAATAGACAAAACCATAGTAGCTTATAATGTTATCCCACAAAATTGGCAACCTGGTCAAGTTTATCGTTCAGTGGTTAATTTCTAG 798 0.3797 MDTVLHCMISFVILYSLMLTPCYGLNPKLFNVSQIQSDNNEWQMAIATWYGPPDGAGSDGGACGYVDSVENPPLNKMISAGGPSLFDGGKGCGACYEVKCNENSACSGNAMTVMITDNCPECVESAHFDLSGTAFGSIAKQGQAQNLRNAGKINIQYRRVACSFGKSIVFRVDSGSNPYYFATEIEYENGDGDIVDVELSQSNTWLPMQRSWGARWALNKGSILQAPFSIKLTESGNGIDKTIVAYNVIPQNWQPGQVYRSVVNF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 150 166 IPR007118 GO:0005576
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 247 261 IPR007118 GO:0005576
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 41 56 IPR007118 GO:0005576
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 59 77 IPR007118 GO:0005576
Trre7g00790 265 PRINTS Expansin/Lol pI family signature 82 100 IPR007118 GO:0005576
Trre7g00790 265 Pfam Lytic transglycolase 79 157 IPR009009 -
Trre7g00790 265 SMART dpbb_1 78 157 IPR007112 -
Trre7g00790 265 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 261 IPR007117 -
Trre7g00790 265 PANTHER EXPANSIN-B3 17 265 - -
Trre7g00790 265 Gene3D - 164 265 IPR036749 -
Trre7g00790 265 Gene3D - 29 163 IPR036908 -
Trre7g00790 265 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 60 167 IPR007112 -
Trre7g00790 265 CDD DPBB_EXPB_N 42 162 - -
Trre7g00790 265 Pfam Expansin C-terminal domain 168 250 IPR007117 -
Trre7g00790 265 SUPERFAMILY Barwin-like endoglucanases 37 164 IPR036908 -
Trre7g00790 265 SUPERFAMILY PHL pollen allergen 166 261 IPR036749 -
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 139 154 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 237 254 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 100 110 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 170 185 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 186 201 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 80 91 IPR005795 GO:0005576|GO:0019953
Trre7g00790 265 PRINTS Major pollen allergen Lol pI signature 117 132 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00790 Trre-Chr7 5226347 5230051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00790 19 265 Expansin Gene Family AT1G65680 55.556 2.02e-96 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00790 - - gmx:100786475 366.311