Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00789 ATGGCTTTGATTGTGGATCAACAATCAAACTTTAAACACTTTTGTAAAATTTGCAAAAAAGGCTTTGGATGTGGAAGAGCATTAGGAGGACATATGAGAGCTCATGGCATAGGAGACGAAACCGGTCAAATGGATGGTGATGATCCGGCGAGCGATTGGGAAGGTGGCAATGTCCCACAAACAAGTAACAAACGTATGTATTCTCTAAGAACAAACCCCAATAAGCTAAAAAGTTGTAGGGTGTGTGAGCATTGTGGCAAGGAATTTTTCTCTTGGAAATCGTTTCTCGAACATGGAAAATGCAACTCCGACGATGCTGATGAAGAGTCTCTTGTATCATCTCCAGAATCCGACACCATGGCAGACGATGATGATGGTGTCGGTGGCAGGAGAGGATGCGGCTGGTCAAAGAGGAAAAGGTCTTTGCGAACTAAAGTAGGTAGTTACAATAATAATTTTAATTGTCCTTCAACCGAAGAAGAAGACTTAGCAAATTGTTTAATGATGTTGTCCAATGCTATTGTTGACCCTCTTGAGGTTGAACCTGAAGAATCATGTGCCTCAGCTAGCAAAGATGAAGAAAGAAGAAACCCTATGAATTTCATTGCACCATTGGCTTATAGAATCCCCTATGAAAACACCACCACCACCACCAACAACAACAACAACAACAATAACAACAAAGCCAAAGGTGTCGCTAAAGGGTTATTTGAATGCAAAGCATGCAAAAAAGTTTTCAACTCACATCAAGCTTTAGGTGGTCATAGAGCAAGTCACAAAAAGGTTAAGGGATGTTTTGCAGCAAGACTTGATCAAAACCTTGATGATAATATTGTTGAGGATGATGCAATCACACATGAAGAATTTTTCCCTTCAAAATCAAACACAACCCAACAATTTGATCAAGGGACCTCCAATAACCCTACATTGGTGGCTTCTTCTTCCAAGAGAAAAGCCAAAGTGCATGAATGCTCAATTTGTCATAGGAGTTTCTCTTCTGGACAAGCCTTAGGTGGACACAAAAGATGCCATTGGATCACATCAAATGCTCCGGATACATCAACATTGGCTAGGTTTCAACAATTTCAAGACCATATTGAACAAATACCTAAATTTGATAACTCTTCTGAGCCAATTGATCTCAAACTTGACCTTAATCTTCCGGCTCCTACCACCAATACACAGATTTACTTGCAACCACCGTGGGGCGCAAATGCGAGTGCGACAAAGGACAAAATCATCAAAGAAGATAACAATAGCCAATGTATGAATCAACAAAATCAAAACAACAACAACCTAGTCGATCAAAATAACGACAATAATAATGATAATAACAAAAATAACAACCTTAATACTTTGGTACAAAATGTTGATAATGAAGATGATAAAAAAGCCAAGTTGGCAAAACTAAGTGAGTTAAAGGATGTCATCAATATTGGTGGAAGTTCTTCACCATGGTTGCAAGTTGGAATTGGTGCAACAACTGATGTGAGGAATGATACGTAA 1506 0.3911 MALIVDQQSNFKHFCKICKKGFGCGRALGGHMRAHGIGDETGQMDGDDPASDWEGGNVPQTSNKRMYSLRTNPNKLKSCRVCEHCGKEFFSWKSFLEHGKCNSDDADEESLVSSPESDTMADDDDGVGGRRGCGWSKRKRSLRTKVGSYNNNFNCPSTEEEDLANCLMMLSNAIVDPLEVEPEESCASASKDEERRNPMNFIAPLAYRIPYENTTTTTNNNNNNNNNKAKGVAKGLFECKACKKVFNSHQALGGHRASHKKVKGCFAARLDQNLDDNIVEDDAITHEEFFPSKSNTTQQFDQGTSNNPTLVASSSKRKAKVHECSICHRSFSSGQALGGHKRCHWITSNAPDTSTLARFQQFQDHIEQIPKFDNSSEPIDLKLDLNLPAPTTNTQIYLQPPWGANASATKDKIIKEDNNSQCMNQQNQNNNNLVDQNNDNNNDNNKNNNLNTLVQNVDNEDDKKAKLAKLSELKDVINIGGSSSPWLQVGIGATTDVRNDT 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00789 501 PANTHER OS02G0659100 PROTEIN 2 498 - -
Trre7g00789 501 Gene3D Classic Zinc Finger 234 344 - -
Trre7g00789 501 SUPERFAMILY beta-beta-alpha zinc fingers 236 344 IPR036236 -
Trre7g00789 501 Coils Coil 423 460 - -
Trre7g00789 501 MobiDBLite consensus disorder prediction 106 128 - -
Trre7g00789 501 ProSitePatterns Zinc finger C2H2 type domain signature. 15 35 IPR013087 -
Trre7g00789 501 ProSitePatterns Zinc finger C2H2 type domain signature. 239 259 IPR013087 -
Trre7g00789 501 Pfam C2H2-type zinc finger 13 35 - -
Trre7g00789 501 Pfam C2H2-type zinc finger 321 346 - -
Trre7g00789 501 Pfam C2H2-type zinc finger 237 261 - -
Trre7g00789 501 Gene3D Classic Zinc Finger 11 101 - -
Trre7g00789 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 344 IPR013087 -
Trre7g00789 501 ProSiteProfiles Zinc finger C2H2 type domain profile. 237 264 IPR013087 -
Trre7g00789 501 SUPERFAMILY beta-beta-alpha zinc fingers 13 99 IPR036236 -
Trre7g00789 501 MobiDBLite consensus disorder prediction 39 62 - -
Trre7g00789 501 SMART c2h2final6 322 344 IPR013087 -
Trre7g00789 501 SMART c2h2final6 237 259 IPR013087 -
Trre7g00789 501 SMART c2h2final6 80 100 IPR013087 -
Trre7g00789 501 SMART c2h2final6 13 35 IPR013087 -
Trre7g00789 501 MobiDBLite consensus disorder prediction 423 450 - -
Trre7g00789 501 ProSitePatterns Zinc finger C2H2 type domain signature. 324 344 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00789 Trre-Chr7 5221016 5222521 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00789 137 387 C2H2 Transcription Factor Family AT1G02040 33.984 1.17e-31 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g00789 zf-C2H2_6 1.6e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00789 - - gmx:100793846 671.003