Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00788 ATGGAGAAGCATAAGTGCAAACTTTGTTTCAGAAGTTTCTCTAATGGAAAAGCTTTAGGTGGACACATGAGATCACACATGATGAACCTACCAATTCCACCACCAAAACAAAACAATTCACCATCACCGCCGCTGCCGCCGCCGATGATTCAACTCAGTTTCGAAGCTGAGTCGGGTTCATCGCCGTCATCCTCTTCATTCTATGGTCTAAGAGAGAATCCGAAGCGAAGCTTCCGATTCACAGATCCCAATCAAATCATCGACGCTGGCTCGATAATCCTCCAAGAAGACGGAGGAAGCGAAAGTGAGTCGTCAAAAAATCCAACCGGTCGACGATCCAAACGTTTCAAGAAAATTGATCCGGTGAAAAACTCAATACAGACTCCTAACGAGTCTGTACTGAGTTCTTCATCGGATATAACTACCGAAGAAGACATAGCTTTTTGTCTCATGATGTTGTCTCGCCACAATAACAATAACAACAACAATTGGAAAACAAAACAACAGAATCACCATCATTATCATCAATATCAAGAAGATCAACAAGAAGAGGAGGAAGAACAATTCAACCAATATCTCGAAGAAGATGAAGACGAAGACGTTGAGGAAGAAGAAGAAAGTGAAGCTGAATCTGAGGAAGAAGAAGAAGAACTGAAACCGTTGAAGAAGGTACGAGGAAGATACAAATGTGACACGTGTAACAAAGTGTTTCGTTCATATCAAGCACTTGGTGGGCATAGAGCGAGTCACAAGAAGAATATGAAGTTAGTTGCAGAAAATGGTGGTTATTCAATTTCAAATCATCATGATCACAAAAATAAAATTGAAAACAATGTTGTTGTTAATCATAACAACAATGGTGAAAAGAGAATTCATGAGTGTCCAATTTGTTTTAGAGAATTTTCCTCTGGTCAAGCACTTGGTGGACATAAGAGAACACATGGTATTGGAATTGGATCATCGGCATCGGCGCGGGCACCGGCAGCAGCAACAACAACGACGGCGACCGCGGTTACAACAACAACAAATGTTCCAACAATAAATGTTGAAGTTGTTCGAAGAAGTTCCGCGAATATCGGGGAAAGTTTAATAGATCTAAATCTTCCTGCTGATATGGATGAAGATGAGGATGGTGATGATGTTAGCCAAATTGAAGGCTCTGCTGTTTCCGATGCTGAAATTGTCAAACCTTAA 1194 0.4095 MEKHKCKLCFRSFSNGKALGGHMRSHMMNLPIPPPKQNNSPSPPLPPPMIQLSFEAESGSSPSSSSFYGLRENPKRSFRFTDPNQIIDAGSIILQEDGGSESESSKNPTGRRSKRFKKIDPVKNSIQTPNESVLSSSSDITTEEDIAFCLMMLSRHNNNNNNNWKTKQQNHHHYHQYQEDQQEEEEEQFNQYLEEDEDEDVEEEEESEAESEEEEEELKPLKKVRGRYKCDTCNKVFRSYQALGGHRASHKKNMKLVAENGGYSISNHHDHKNKIENNVVVNHNNNGEKRIHECPICFREFSSGQALGGHKRTHGIGIGSSASARAPAAATTTTATAVTTTTNVPTINVEVVRRSSANIGESLIDLNLPADMDEDEDGDDVSQIEGSAVSDAEIVKP 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00788 397 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Trre7g00788 397 ProSitePatterns Zinc finger C2H2 type domain signature. 230 250 IPR013087 -
Trre7g00788 397 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 396 IPR044303 GO:0006355
Trre7g00788 397 Coils Coil 179 217 - -
Trre7g00788 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 228 255 IPR013087 -
Trre7g00788 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 314 IPR013087 -
Trre7g00788 397 ProSitePatterns Zinc finger C2H2 type domain signature. 294 314 IPR013087 -
Trre7g00788 397 MobiDBLite consensus disorder prediction 160 220 - -
Trre7g00788 397 MobiDBLite consensus disorder prediction 54 70 - -
Trre7g00788 397 MobiDBLite consensus disorder prediction 368 382 - -
Trre7g00788 397 MobiDBLite consensus disorder prediction 34 50 - -
Trre7g00788 397 Pfam C2H2-type zinc finger 4 27 - -
Trre7g00788 397 Pfam C2H2-type zinc finger 227 252 - -
Trre7g00788 397 Pfam C2H2-type zinc finger 292 314 - -
Trre7g00788 397 MobiDBLite consensus disorder prediction 123 138 - -
Trre7g00788 397 Gene3D Classic Zinc Finger 225 314 - -
Trre7g00788 397 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Trre7g00788 397 SMART c2h2final6 228 250 IPR013087 -
Trre7g00788 397 SMART c2h2final6 292 314 IPR013087 -
Trre7g00788 397 SMART c2h2final6 4 26 IPR013087 -
Trre7g00788 397 MobiDBLite consensus disorder prediction 367 397 - -
Trre7g00788 397 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Trre7g00788 397 MobiDBLite consensus disorder prediction 181 215 - -
Trre7g00788 397 SUPERFAMILY beta-beta-alpha zinc fingers 227 314 IPR036236 -
Trre7g00788 397 MobiDBLite consensus disorder prediction 21 70 - -
Trre7g00788 397 MobiDBLite consensus disorder prediction 92 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00788 Trre-Chr7 5206641 5207834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00788 1 376 C2H2 Transcription Factor Family AT3G60580 38.619 2.66e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g00788 zf-C2H2_6 6.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00788 - - tpra:123923298 496.508