Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00752 ATGGCTTCATTTCCTTTAGTAACAACTCTTTTAATATTTCCCTTTCTTTTCTCCACTATTGTTTATGGTTACTCATTAAGTTCCATAAAATCATGGTGTAGCCAAACCCCTTATCCTCAACCATGTGAGTATTATTTAACTCACAATAATTTCAACCAAACCATAAAAAATAAATCCGATTTTTACAAAGTTTCACTTCAACTTGCAATACAAAGAGCACAAAAGGGCCAAGAAAACACACATGCAGTAGGCCCAAAGTGCCGTAACCCACAAGAAAAATCTGCATGGTCAGATTGTTGTGAGCTTTATGATTTGACAATCCAAAAGCTAACTCAAACGGTCGACCCAAATTGCAAACATACCGATTCTCAAACTTGGCTTAGTACAGCCCTCACAAACCTCGAAACATGCAAAAATGGGTTTTATGACCTTGGTGTCACAAACTATGTCTTACCTTTGGTGTCCAATAATAATATTTCAAAGTTGTTAAGTAACACCTTGTCTCTCAACAAGGTTCCTTACCAACAACCAAGTTACAAAGGTGGATTTCCTACATGGGTTAAACCCGGTGATAGGAAGCTTCTTCAAACATCTTCCGCGGCTTCTAAGGCTAACGTTGTGGTTGCTAAAGATGGTTCTGGCAAGTACACAACTGTGAAGGCCGCGACCGATGCTGCACCAAGTGGTAGTGGAAGGTATGTTATATATGTGAAGGCAGGTGTATACAATGAACAAGTTGAGATCAAAGCAAAGAATGTCATGTTGGTCGGAGATGGTATTGGCAAGACCATAATCACCGGTAGCCAAAGCGTTGGAGGTGGCACTACTACGTTCCGCTCAGCAACCGTTGCCGCTGTTGGTGATGGATTTATTGCTCAAGACATCACATTCAGAAACACAGCTGGAGCTGCAAATCATCAAGCTGTTGCATTCCGCTCAGGCTCAGATCTATCGGTTTTTTACAAATGTAGTTTCGAAGGTTATCAAGACACACTTTACGTTCATTCAGAAAGACAATTTTATAGAGAATGTAACATTTATGGCACAGTTGATTTCATCTTCGGTAATGCCGCCGTAGTTTTGCAAAGTTGCAACATTATTGCAAGAAACCCACCTCAAAAAACAATCACAGTTACCGCTCAAGGACGAACTGATCCAAACCAAAACACTGGAATCGTAATTCACAATTCTCAGATCACAGCCGCATCAGACTTAAACCCTAGTTCCGTAAAATCATACCTCGGCCGACCTTGGCAAAAATATTCAAGAACAGTTGTCATGAAAACTTCCATTGGTAGTTTTATTAACCCTGCTGGTTGGTTACCATGGGATGGTAATTTTGCTTTGGATACTTTGTATTATGCTGAATATGCTAATACTGGCTCAGGTGCATCCACTTCAAATAGGGTTACATGGAAAGGTTACCATGTTCTTACTAGTGCATCTCAAGCTACACCATTCACTGTTGGAAATTTCATTGCCGGTAATTCGTGGATACCAAACACGGGCGTACCTTTCACCGCTAGTCTTTAA 1533 0.4051 MASFPLVTTLLIFPFLFSTIVYGYSLSSIKSWCSQTPYPQPCEYYLTHNNFNQTIKNKSDFYKVSLQLAIQRAQKGQENTHAVGPKCRNPQEKSAWSDCCELYDLTIQKLTQTVDPNCKHTDSQTWLSTALTNLETCKNGFYDLGVTNYVLPLVSNNNISKLLSNTLSLNKVPYQQPSYKGGFPTWVKPGDRKLLQTSSAASKANVVVAKDGSGKYTTVKAATDAAPSGSGRYVIYVKAGVYNEQVEIKAKNVMLVGDGIGKTIITGSQSVGGGTTTFRSATVAAVGDGFIAQDITFRNTAGAANHQAVAFRSGSDLSVFYKCSFEGYQDTLYVHSERQFYRECNIYGTVDFIFGNAAVVLQSCNIIARNPPQKTITVTAQGRTDPNQNTGIVIHNSQITAASDLNPSSVKSYLGRPWQKYSRTVVMKTSIGSFINPAGWLPWDGNFALDTLYYAEYANTGSGASTSNRVTWKGYHVLTSASQATPFTVGNFIAGNSWIPNTGVPFTASL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00752 510 CDD PMEI-like_3 31 171 - -
Trre7g00752 510 NCBIfam pectinesterase inhibitor domain 10 172 IPR006501 GO:0004857
Trre7g00752 510 ProSitePatterns Pectinesterase signature 2. 346 355 IPR033131 -
Trre7g00752 510 SUPERFAMILY Pectin lyase-like 199 508 IPR011050 -
Trre7g00752 510 SMART PMEI_2 24 169 IPR006501 GO:0004857
Trre7g00752 510 FunFam Pectinesterase 199 510 - -
Trre7g00752 510 ProSitePatterns Pectinesterase signature 1. 229 248 IPR018040 -
Trre7g00752 510 Gene3D - 199 510 IPR012334 -
Trre7g00752 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 172 IPR035513 -
Trre7g00752 510 Pfam Plant invertase/pectin methylesterase inhibitor 28 169 IPR006501 GO:0004857
Trre7g00752 510 PANTHER PECTINESTERASE 18 500 - -
Trre7g00752 510 Pfam Pectinesterase 205 496 IPR000070 GO:0030599|GO:0042545
Trre7g00752 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 28 172 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00752 Trre-Chr7 4919224 4923501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00752 1 510 Carbohydrate Esterase AT2G45220 66.214 0.0 706
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00752 K01051 - gmx:100794948 838.18