Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00749 ATGAGAACTTATGCCACCGTTTTGTTCCTCTTCTTTGCCATGTCCATAACCACATCCTTTTGCCTCCAAGAAATGGAGGTACTTCAAATGGCTCAAAAACAAGTTTCACAAGCCATGAATTGGGTTGATAACTCTATGAAATTGCATGGCTTAGAAAGCACTAGTATTTCATCATTAAATCAAACAAGTGTTTTAGCTCTTAGAGATTGTGCTAAACTCTATGAGGAGAGTGAGTCTAGGCTTAATCAAATGATGTTTGAAAAGAGTGGTTACACTAAAGAAGATGCACTTATATGGATAAGTGCATTGATGACAAACCATAGGACTTGTTTGGATGGATTAAATGAAAAAGGATATTTTCAAGGTGATCAAATTTTGGGTAGAAACTTGACAAGGTTGCTTGGCCAAACACTTGCTTTTTATTCAAACAACAAAGTAAAAGGAAAAGAACAACTTCAAAGAAACACAATATTAGAAGAAAATGAAAATGATGGACTATTAGAATCATGGAGTCTAGCTAGCAATAAAGCAGATTTCACAGTTGCACAAGATGGTTCAGGAACTCACAAAACAATCAAAGAAGCATTGGATGCACTTGCTTCAATGGGACATAATCATCCTTCAAGAGCAATTATACATGTAAAAGCAGGAGTGTACCATGAAAAAGTTGAGATTGGAAGCAAGTTGCATAATGTTATGTTTGTTGGAGATGGCATTGACAAAACTATTGTCACTGGAAATAGGAATGTTGTTCATGGTTCTACCACTCTTAACTCTGCCACATTTGATGTATCAGGGGATGGATTTTGGGCAAGAGATATGACATTTGAGAACACAGCAGGACCAGAAAATCACCAAGCAGTAGCACTCAAAGTAAGTTCAGACTTATCAGTCTTCTACAGATGCAGCTTCAAAGCCTACCAAGACACACTTTACGTACACTCGAATCGACAATTCTACCGCGACTGCCACATATACGGAACAATCGATTTCATATTCGGCGACGCAGCCGTAGTCTTACAAAATTGCGACATTTTCATTCGAAAACCAATGAGTCACCAATCAAATTTCATCACGGCACAAGGTCGAGACGATCCAAACAAACCGACCGGAATTTTGATACAAAATTGTAGGGTTAGGCCTGATTCTGAATTTTCTATGATTAAAGATAATTTCAAGAGTTTTTTAGGTAGGCCTTGGAAAAAATATTCAAGAACTGTTTTTATAAAAAGTGATTTAGATGGTTTGATTCATCCTAAGGGTTGGGGTGAATGGGAGGGTAATTTTGCACTTTCAACTTTATATTATGGTGAATATATGAATTATGGAAATGGTGCATCTACACAAAATAGGGTTAATTGGCCAGGTTTTCATGTGTTGAATAGTGCTAATGAGGCTTCACAATTTACAGTTAGTAGATTTTTGCAAGGTGGATATTGGATTTCAGCTTCAGGGGTGCCATTTTGGGCTGGAATTTAA 1479 0.3705 MRTYATVLFLFFAMSITTSFCLQEMEVLQMAQKQVSQAMNWVDNSMKLHGLESTSISSLNQTSVLALRDCAKLYEESESRLNQMMFEKSGYTKEDALIWISALMTNHRTCLDGLNEKGYFQGDQILGRNLTRLLGQTLAFYSNNKVKGKEQLQRNTILEENENDGLLESWSLASNKADFTVAQDGSGTHKTIKEALDALASMGHNHPSRAIIHVKAGVYHEKVEIGSKLHNVMFVGDGIDKTIVTGNRNVVHGSTTLNSATFDVSGDGFWARDMTFENTAGPENHQAVALKVSSDLSVFYRCSFKAYQDTLYVHSNRQFYRDCHIYGTIDFIFGDAAVVLQNCDIFIRKPMSHQSNFITAQGRDDPNKPTGILIQNCRVRPDSEFSMIKDNFKSFLGRPWKKYSRTVFIKSDLDGLIHPKGWGEWEGNFALSTLYYGEYMNYGNGASTQNRVNWPGFHVLNSANEASQFTVSRFLQGGYWISASGVPFWAGI 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00749 492 PANTHER PECTINESTERASE 26 482 - -
Trre7g00749 492 Gene3D - 172 492 IPR012334 -
Trre7g00749 492 Pfam Pectinesterase 178 477 IPR000070 GO:0030599|GO:0042545
Trre7g00749 492 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 120 IPR035513 -
Trre7g00749 492 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 143 IPR035513 -
Trre7g00749 492 FunFam Pectinesterase 172 492 - -
Trre7g00749 492 SMART PMEI_2 12 140 IPR006501 GO:0004857
Trre7g00749 492 Pfam Plant invertase/pectin methylesterase inhibitor 28 122 IPR006501 GO:0004857
Trre7g00749 492 ProSitePatterns Pectinesterase signature 2. 325 334 IPR033131 -
Trre7g00749 492 SUPERFAMILY Pectin lyase-like 176 491 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00749 Trre-Chr7 4887798 4893623 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00749 6 492 Carbohydrate Esterase AT3G60730 53.502 0.0 559