Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre7g00744 | ATGGCACAAAAATTCATTATCCTATCACTAGTCATTTTTGTCTCACTCTTCTTAGAATCCTCCCTAGCCAAACATAACTCTCAGACAATAACCTACATAGAATCCTCTTGCAATGGTACCCTCTACCCTAAACTTTGCATTCGTTGTCTTAACAAATTTTCCAAGTCAACCATAAATGGACCTCAACACTTAGCCCAAGTAGCCTTATCCGTGAGCCTCTCTAGAGCCCTACAAACAAGAGGGTACCTTCTGAATGTTGCTAAAGAACTCAAAGCAATTGATCAAAGAAACAAAAGGATGTACCTAACCGTGCAAGATTGTGTGAATCAAATCAATGATAGTGTTGACCAACTTAGCCAAGCGATCAAAGAATTAAAAAGGTTGAACAACTTTAACACCATCATCAATGATAAAGTGTTGTGGCATATAAGTAATGTTGAGACATGGGTGAGCACGGCCTTAACCGATGCGAGTAGTTGTGTACAATCGTTCCCCGGTCATAGGATGAGCAAAAGGGTTGCGACGATTAAGGTTAAGGCGAAGAATGTTGCAGAAGTTACTAGTAATGCACTTGCTTTGTTTCATAGTTATGCTTCTAGTTACAAGCAAGCAACAGCTAGAGCTACCAAGAAGCCTTGA | 639 | 0.4006 | MAQKFIILSLVIFVSLFLESSLAKHNSQTITYIESSCNGTLYPKLCIRCLNKFSKSTINGPQHLAQVALSVSLSRALQTRGYLLNVAKELKAIDQRNKRMYLTVQDCVNQINDSVDQLSQAIKELKRLNNFNTIINDKVLWHISNVETWVSTALTDASSCVQSFPGHRMSKRVATIKVKAKNVAEVTSNALALFHSYASSYKQATARATKKP | 212 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre7g00744 | 212 | NCBIfam | pectinesterase inhibitor domain | 6 | 197 | IPR006501 | GO:0004857 | |
| Trre7g00744 | 212 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 32 | 196 | IPR035513 | - | |
| Trre7g00744 | 212 | FunFam | Pectinesterase inhibitor 3 | 28 | 198 | - | - | |
| Trre7g00744 | 212 | CDD | PMEI-like_3 | 35 | 199 | - | - | |
| Trre7g00744 | 212 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 29 | 197 | IPR035513 | - | |
| Trre7g00744 | 212 | Coils | Coil | 108 | 128 | - | - | |
| Trre7g00744 | 212 | PANTHER | PECTINESTERASE INHIBITOR-LIKE | 9 | 193 | - | - | |
| Trre7g00744 | 212 | Pfam | Plant invertase/pectin methylesterase inhibitor | 32 | 193 | IPR006501 | GO:0004857 | |
| Trre7g00744 | 212 | SMART | PMEI_2 | 28 | 193 | IPR006501 | GO:0004857 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre7g00744 | Trre-Chr7 | 4869820 | 4870458 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre7g00744 | 19 | 194 | Carbohydrate Esterase | AT5G53370 | 25.683 | 9.83e-10 | 55.8 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre7g00744 | - | - | gmx:100791798 | 302.753 |