Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00743 ATGAATCTTGATAAACTACGTGAATGGGCGTCTGATCAGAACACGATCAGAAAGACATGCAACCATTCATCATCCAATGTTGATTCTTCCTCATCATCTACTAATCATTTTGGTAATAATACTCCTGCTCTTAGGAAAGCAATGATAATTCTTGAATCTCAGTTTAGTCACCCGCATGTGTCAGTGTTATCATCAATTGATGAAGTCAACAACAACAAAAACATGATGAATGTTGTTGCTTCTGATCATCTGGATCTCCCTGGAGGCTCATCATCACACTCAGATGAGCCTCCAGTTCAGATGATCAATGTTGTTGCTACAGATGGTGATGAGTTTGATGAGTTTGTTCAGATGAATGTTGTTGCTTCTGATCATCTGGATCTCCCTGGAGGCTCATCATCACACTCAGATGAGCCTCCAGTTCAGATGATCAATGTTGTTGCTACAGATGGTGATGAGTTTGGTGACGGTAACAACAACAGGAAGAAGAAGCTCAAGAAAAGTGCTGATGATGGAACAATCCGCAGCCTTTCATGCCCAAAATATGGACCGTACAGATGTTCAGTTGAACTTTGCGAAATGGTATTTGCAACATCACAAAAATTTGCTAGCCATGTGAAGGTGTGTCACCACAAGGGCGGAAAAAAACAAAAATGA 657 0.4079 MNLDKLREWASDQNTIRKTCNHSSSNVDSSSSSTNHFGNNTPALRKAMIILESQFSHPHVSVLSSIDEVNNNKNMMNVVASDHLDLPGGSSSHSDEPPVQMINVVATDGDEFDEFVQMNVVASDHLDLPGGSSSHSDEPPVQMINVVATDGDEFGDGNNNRKKKLKKSADDGTIRSLSCPKYGPYRCSVELCEMVFATSQKFASHVKVCHHKGGKKQK 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00743 218 ProSitePatterns Zinc finger C2H2 type domain signature. 187 211 IPR013087 -
Trre7g00743 218 MobiDBLite consensus disorder prediction 150 170 - -
Trre7g00743 218 MobiDBLite consensus disorder prediction 155 170 - -
Trre7g00743 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 185 216 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00743 Trre-Chr7 4862487 4863143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00743 171 212 C2H2 Transcription Factor Family AT5G22990 52.381 2.46e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g00743 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00743 - K16669 tpra:123922079 113.62