Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00742 ATGACGAGGAAGAAGGTGAAACTTGCCTTTATCTCTAATGTTTTAGCAAGGAAGGAATCATACAGGAAAAGAAAGAAGGGTATCATCAAAAAGATGAGAGAAATCAAGATTCTTTGTGGTATTCCAACATGTGCTATAATTTCAAATCCTTTTAATTCTAAGACAGAGGTGTGGCCAGATCTAGAAGGAGCCAAGCAAGTGGTTGAGAGGATTACTAAGGCCAAGGAGAAACTTGAAAAGAAAAGGCAAGAGATGGAGCTGACCATTTGTATGCTTAAGTACATGAAAAACAAAAAAATTCCTGTTTCAGATTTGAAAGATTATGATAAGCTAATTAAGAAGCATCTCAAAGATATTGATAACAAGATTGTTGAGTTGAACATATCCAATTAG 393 0.3486 MTRKKVKLAFISNVLARKESYRKRKKGIIKKMREIKILCGIPTCAIISNPFNSKTEVWPDLEGAKQVVERITKAKEKLEKKRQEMELTICMLKYMKNKKIPVSDLKDYDKLIKKHLKDIDNKIVELNISN 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00742 130 Gene3D - 15 127 IPR036879 GO:0003677|GO:0046983
Trre7g00742 130 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
Trre7g00742 130 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Trre7g00742 130 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Trre7g00742 130 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Trre7g00742 130 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g00742 130 Coils Coil 61 88 - -
Trre7g00742 130 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00742 Trre-Chr7 4851869 4852327 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00742 1 123 Type I MADS-box Gene Family AT5G48670 37.908 1.07e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g00742 SRF-TF 8.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00742 - - gmx:100792290 120.168