Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00741 ATGACGAGGAAGAAGTTGAAACTTGCCTTTTTGTCAGATGATAAAGCAAGGAAGGCGACTTATAAGAAAAGAATGAAGAGTGTCATCAAGAAGGTGAGCGAACTCTCCATTCTTTGCAATATTCCAGCTTGTGCTATAATTTCAAATCCTTTTAATTCTAAAACAGAGGTGTGGCCAAATCTAGAGGAAGCCAAACAGGTGATTAAGAGGTATCAGAATTCATCTGAGATAGATGAGGCAAGAAATGTGAACCAGAAGAGCTTCCTCTTGCAGAACATTACTAAAGCCAAGGAGAAACTTGAAAAGATAAAGCAAGATATTCATGAGAAAGAGCTGACCATTCGTATGATTGGGTACATGCAAAATAAAAAACTGCCTGACGATCTATCTGCTTCGGATTTGAAAGATTTTGATAAGCAAATTGACAAAAATCTGAAAGGGATTGATAACAAGATCGCTGAGCTCAAATTATCCAATTAA 480 0.3688 MTRKKLKLAFLSDDKARKATYKKRMKSVIKKVSELSILCNIPACAIISNPFNSKTEVWPNLEEAKQVIKRYQNSSEIDEARNVNQKSFLLQNITKAKEKLEKIKQDIHEKELTIRMIGYMQNKKLPDDLSASDLKDFDKQIDKNLKGIDNKIAELKLSN 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00741 159 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Trre7g00741 159 Gene3D - 13 105 IPR036879 GO:0003677|GO:0046983
Trre7g00741 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Trre7g00741 159 Coils Coil 86 113 - -
Trre7g00741 159 Coils Coil 61 81 - -
Trre7g00741 159 PANTHER MADS BOX PROTEIN 3 152 - -
Trre7g00741 159 SUPERFAMILY SRF-like 1 81 IPR036879 GO:0003677|GO:0046983
Trre7g00741 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 50 IPR002100 GO:0003677|GO:0046983
Trre7g00741 159 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00741 Trre-Chr7 4838534 4841078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00741 1 159 MADS-box Gene Family AT5G26630 38.125 2.66e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g00741 SRF-TF 5.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00741 - - gmx:100792290 186.808