Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00666 ATGTTGTTTTCCATTCCATTGTTTATTGTCTTTTCAAGCCTTTGCTTGTTAACCAAGCAAACAAAAATGAAAGAGAGTGACACAAAGATCACTGGCGGCCATAATAGTGAACAAGTGGGTTACGTTGAGGAACTTAGGTCAAATAATAAAAGCAAGGAAATTTATAAAGAGTGTAGAAAAAATCACGCTTCAAGCATTGGGGGCTATGCTCTTGATGGTTGTTGCGAGTTTTTACCTGCAGGAGTGGAAGGTACTCTTGATTTTTTCAAGTGTGCGGCCTGCTTTTGTCATAAAAATTTTCACCGTCAAGAAATCGTTTCTAGAAAACCGACTCAGATCACCTACATTCCTCAACCAACTCCCATCTCGACGGTCTTTCAGACTAAGAATGGTTACCATCATGTGACTGGGCCATCCAGGGAGACCACAACTGCACCTGCTTTTCCTTCTACTGTTATCCATGACGGGGCTCATTTTCATGATACTGATCCAATCAATGGTGGTAGTAGTGGTGGCGGAGAAGGTTCATCGAGCTCTAAGAAAAGGTTTAGGACTAAATTTAGTCATGAACAAAAGGAGCAGATGTTAGATTTTGCTGTCAAAATAGGCTGGAGGATTAAGAAACAAGATCAAAATGTTGTTGAGATGTTTTGCAACAAGATTGGGGTCAAGTTTCAAGTGTTTAAGGTTTGGATGCAAAACAATAGACACACCATTGGTAAAAAGCCTTAG 732 0.4016 MLFSIPLFIVFSSLCLLTKQTKMKESDTKITGGHNSEQVGYVEELRSNNKSKEIYKECRKNHASSIGGYALDGCCEFLPAGVEGTLDFFKCAACFCHKNFHRQEIVSRKPTQITYIPQPTPISTVFQTKNGYHHVTGPSRETTTAPAFPSTVIHDGAHFHDTDPINGGSSGGGEGSSSSKKRFRTKFSHEQKEQMLDFAVKIGWRIKKQDQNVVEMFCNKIGVKFQVFKVWMQNNRHTIGKKP 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00666 243 Gene3D - 166 240 - -
Trre7g00666 243 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 55 104 IPR006456 -
Trre7g00666 243 Pfam ZF-HD protein dimerisation region 54 105 IPR006456 -
Trre7g00666 243 SUPERFAMILY Homeodomain-like 167 241 IPR009057 -
Trre7g00666 243 MobiDBLite consensus disorder prediction 159 188 - -
Trre7g00666 243 FunFam Zinc-finger homeodomain protein 2 170 241 - -
Trre7g00666 243 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 37 238 - -
Trre7g00666 243 NCBIfam homeobox domain, ZF-HD class 180 236 IPR006455 -
Trre7g00666 243 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 105 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00666 Trre-Chr7 4311506 4312237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00666 55 239 ZF-HD Transcription Factor Family AT4G24660 46.073 1.16e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre7g00666 ZF-HD_dimer 2e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00666 - - tpra:123892177 386.726