Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00655 ATGGAAAGTAACGAGTTGAAAGACGAACAACAGGAAATCTACGAATCCTTTATATGCTGCGTTTGCCTGGATCTGTTATACAAGCCCATTGTGCTATCTTGTGGCCACGTATCATGTTTCTGGTGTGTCCATAAATCAATGAATAATTCTTCCGAATCCCATTGTCCAATTTGTAGGCATTCATACTATCACTTTCCAACTATCTGTCAAATGCTTCACTTTTTGCTTCTTAAGACATATCCTGCAGCTTACAAGAGAAGGGAAAAGCAGACACTTGAGGAAGAAGAGAAAGAGGATTGTTTCTCCCCTCAATTTATATGTGATCATCCTGAGAATTCGCCTACCAGTACTACCATAAATCAGACGTCTAACTCATGCAACACAGAATCTTTTGAAAGTATGGAGCAATCAGGGTCTTCAAATCATAATGGCGATGAAGGCATCATTTCTGAATACTCTTCTGAAAGGAAACCTCAAATTATAGGGACTCCTTCAGTTGACGGTAAAAGATTGCCTCAAAATGAGCACAATCAGAAACCAAAAATATTAGTTGCAGATTTAATGTGTCCAATGTGCAAACAAATGCTCATTCATCCTGTTGGTCTTAATTGTGGTCATGTATACTGTGAGACTTGTATCACCGACTTACCTCATGAGGTGCTTATATGTCAAGTTTGTCAAAGTCCACATCCCGGAGGATTTCCAAAAGTTTGTTTGGCTCTTGACCAATTTTTAGAGGAGCAATTTCCAGAAGAGTACACACAGAGAAGAGATGCAATTCAACTTAGCCAAATCAAAGTCCATCCTGAAACCGCATCTTCTTGTTCGTTGTCCAAGGACGACGGAGAAAAGATAGCTTTGGGGTCTAATCCTAGATTGTTAGTTCACACAGGAGCTGGTTGTGATTTTTGTGGGATGTATCCAATAATAGGGGACAGATATAGATGTGTTGACTGTACAGAGATTATCGGCTTTGATCTTTGTGGTGATTGCTATAAGAACCGCTCAAAGCGTCCAGGCCGATTCAACCAGAAGCACACCCCTGACCACAAGTTAGAGCTTGTACAATATCATGTACACTATCAAAGGATGCTAATTAGCCGTGGACAAGATTCTTCAGATTTTATAGTTATACAGGGTGAAACTGATTCCTCCACTGATGGAGAACAAAACCAGAGCGACTCCGACGCCACCAACTGA 1200 0.4058 MESNELKDEQQEIYESFICCVCLDLLYKPIVLSCGHVSCFWCVHKSMNNSSESHCPICRHSYYHFPTICQMLHFLLLKTYPAAYKRREKQTLEEEEKEDCFSPQFICDHPENSPTSTTINQTSNSCNTESFESMEQSGSSNHNGDEGIISEYSSERKPQIIGTPSVDGKRLPQNEHNQKPKILVADLMCPMCKQMLIHPVGLNCGHVYCETCITDLPHEVLICQVCQSPHPGGFPKVCLALDQFLEEQFPEEYTQRRDAIQLSQIKVHPETASSCSLSKDDGEKIALGSNPRLLVHTGAGCDFCGMYPIIGDRYRCVDCTEIIGFDLCGDCYKNRSKRPGRFNQKHTPDHKLELVQYHVHYQRMLISRGQDSSDFIVIQGETDSSTDGEQNQSDSDATN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00655 399 MobiDBLite consensus disorder prediction 111 175 - -
Trre7g00655 399 MobiDBLite consensus disorder prediction 111 148 - -
Trre7g00655 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 110 IPR013083 -
Trre7g00655 399 SUPERFAMILY RING/U-box 9 69 - -
Trre7g00655 399 ProSiteProfiles Zinc finger ZZ-type profile. 296 360 IPR000433 GO:0008270
Trre7g00655 399 Gene3D - 292 357 IPR043145 -
Trre7g00655 399 SUPERFAMILY RING/U-box 182 249 - -
Trre7g00655 399 ProSiteProfiles Zinc finger RING-type profile. 19 59 IPR001841 -
Trre7g00655 399 SUPERFAMILY RING/U-box 290 355 - -
Trre7g00655 399 ProSitePatterns Zinc finger RING-type signature. 204 213 IPR017907 -
Trre7g00655 399 Pfam Zinc finger, ZZ type 296 337 IPR000433 GO:0008270
Trre7g00655 399 SMART ring_2 189 226 IPR001841 -
Trre7g00655 399 SMART ring_2 19 58 IPR001841 -
Trre7g00655 399 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 167 258 IPR013083 -
Trre7g00655 399 Pfam RING-type zinc-finger 189 213 IPR027370 -
Trre7g00655 399 PANTHER UNCHARACTERIZED 7 385 - -
Trre7g00655 399 FunFam E3 ubiquitin-protein ligase PRT1 10 105 - -
Trre7g00655 399 Pfam Zinc finger, C3HC4 type (RING finger) 17 61 - -
Trre7g00655 399 FunFam E3 ubiquitin-protein ligase PRT1 290 355 - -
Trre7g00655 399 ProSiteProfiles Zinc finger RING-type profile. 189 227 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00655 Trre-Chr7 4227619 4234079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00655 1 59 C3H Transcription Factor Family AT1G74990 38.333 7.65e-09 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00655 - - tpra:123920334 719.153