Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00640 ATGTTTCTTTCAGTTATCACTTGTTGTACTGTTTCTGATGCATGGAATTACTTGTTCAACCAAAATTTTGATATCATTCTTGTTGAAGCTTGTATGCCAAGCAATGATGCTTTTGCTTTTGTTGGACAAATTACTTCACTTTTCAAACTTCCTGTCATCATGATGTCTCTTGATCACACGCCGTCTTCCATTATGAATTCTATTGCTGAAGGGGCTTGCACATACTGGTCCAAGCCATTGGATGAGAATCAATTCAAGACCATGTGGCAGCATGTTGTACGAAACACTTTGAGCGAAAGTCAGCTACATGTTTTACGGAAGGCTTTGAGCGAAAGTCATGAACTTCCTCAAACCTTGGAGGTTAAAGGCCATAAAAAACGAGGAAGAGAAGATGCTGATGTACCAAAACCACCTCTTGCAAAGAAAAGCCGTTTGTCATGGACACCTGAATTGGACGAACAATTCTTATCGGCTGTGAATCATCTCGGGGTTAATATGCCGAAAGAAATTCTGAAACGGATGAACTTTCCCGGTTTGACATCAGGCCATGTAGCTAGCCATTTACAGAAGTATAGAAACTATTTGAGAGGTGGAATCAGAAAGTCAAAGTTGAGTGGATTTGATTTTGAAGGTCATGACAAAATTCATACACAACAACATTGGACTGAAATTGCCGAATCCAACATTTTTTCTGATTTATCTGACTTGTTCCCAGATCTTGTTGATGAGTTATAA 735 0.3905 MFLSVITCCTVSDAWNYLFNQNFDIILVEACMPSNDAFAFVGQITSLFKLPVIMMSLDHTPSSIMNSIAEGACTYWSKPLDENQFKTMWQHVVRNTLSESQLHVLRKALSESHELPQTLEVKGHKKRGREDADVPKPPLAKKSRLSWTPELDEQFLSAVNHLGVNMPKEILKRMNFPGLTSGHVASHLQKYRNYLRGGIRKSKLSGFDFEGHDKIHTQQHWTEIAESNIFSDLSDLFPDLVDEL 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00640 244 ProSiteProfiles Response regulatory domain profile. 1 93 IPR001789 GO:0000160
Trre7g00640 244 MobiDBLite consensus disorder prediction 116 141 - -
Trre7g00640 244 FunFam Two-component response regulator 139 197 - -
Trre7g00640 244 SUPERFAMILY CheY-like 4 113 IPR011006 -
Trre7g00640 244 Gene3D - 139 197 - -
Trre7g00640 244 NCBIfam myb-like DNA-binding domain, SHAQKYF class 142 193 IPR006447 GO:0003677
Trre7g00640 244 MobiDBLite consensus disorder prediction 117 138 - -
Trre7g00640 244 Pfam Response regulator receiver domain 5 88 IPR001789 GO:0000160
Trre7g00640 244 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 196 IPR045279 GO:0009736
Trre7g00640 244 SUPERFAMILY Homeodomain-like 140 196 IPR009057 -
Trre7g00640 244 Gene3D - 1 127 - -
Trre7g00640 244 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 139 196 IPR017930 -
Trre7g00640 244 Pfam Myb-like DNA-binding domain 145 192 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00640 Trre-Chr7 4144099 4145219 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00640 23 201 Response Regulator Gene Family AT3G16857 34.404 3.25e-29 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre7g00640 Response_reg 4.1e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00640 - - tpra:123923208 337.035