Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00634 ATGGCTTTTTCCACTGACAATCCATCCTTTCCAGCCGGTCTTAAAATTCTTGCAGTTGATCACGATGTGGGTACTCTATGCACTATCCAGGATATCTGCAATGACTTACACTATCAAGTTATCACTTGTTGTACTGTTTCTGATGCATGGAATTACTTGTTCAACCAAAATTTTGATATCATTCTTGTTGAAGCTTGTATGCCAAGCAATGATACTTTTGCTTTTGTTCGACAAATTACTTCACTTTTCAAACTTCCTGTCATCATGATGTCTCTTGATCACACTCCGTCTTCCATTATGAATTCTATTGCCGAAGGGGCTTGCGCATTCTGGTCCAAGCCATTGGATAAGAATCAATTCAAGACCATGTGGCAACATGTTGTACGAAACACTTTGAGCGAAAGTCAGCTGCATGTTTTACGGAAGGCTTTGAGCGAAAGTCATGAACTTCCTCAAACCTCGGAGGTTAAAGGCCATAAAAAGCGAGGAAGAGAAGATGTTGATGTACCAAAACCACCTCTTGCAAAGAAAAGCCGTTTGTCATGGACACCTGAATTGAACGAACAATTCTTATCGGCTGTGAATCAACTCGGGGTTAATAATGCAGTGCCGAAAGAAATTCTGAAACGGATGAACTTTCCTGGTTTGAGTCGTTTGACCTCAGGGCATGTAGCTAGCCATTTACAGAAGTATAGAAACTATTTGAGAGGTGGAATCAGAAAGTCAAAGTTGAGTGGATTTGATTTTGAAGGTCATGACAAAATTCATACACAACAACATTGGACTGAAATTGCCGAATCCAACATTTTTTCTGATTTATCTGACTTGTTCCCAGATCTTGTTGATGAGTTATAA 855 0.3965 MAFSTDNPSFPAGLKILAVDHDVGTLCTIQDICNDLHYQVITCCTVSDAWNYLFNQNFDIILVEACMPSNDTFAFVRQITSLFKLPVIMMSLDHTPSSIMNSIAEGACAFWSKPLDKNQFKTMWQHVVRNTLSESQLHVLRKALSESHELPQTSEVKGHKKRGREDVDVPKPPLAKKSRLSWTPELNEQFLSAVNQLGVNNAVPKEILKRMNFPGLSRLTSGHVASHLQKYRNYLRGGIRKSKLSGFDFEGHDKIHTQQHWTEIAESNIFSDLSDLFPDLVDEL 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00634 284 Gene3D - 174 237 - -
Trre7g00634 284 Pfam Response regulator receiver domain 16 123 IPR001789 GO:0000160
Trre7g00634 284 SUPERFAMILY Homeodomain-like 175 236 IPR009057 -
Trre7g00634 284 NCBIfam myb-like DNA-binding domain, SHAQKYF class 177 233 IPR006447 GO:0003677
Trre7g00634 284 SUPERFAMILY CheY-like 13 147 IPR011006 -
Trre7g00634 284 Pfam Myb-like DNA-binding domain 180 232 IPR001005 -
Trre7g00634 284 Gene3D - 11 135 - -
Trre7g00634 284 MobiDBLite consensus disorder prediction 148 174 - -
Trre7g00634 284 FunFam Two-component response regulator 174 237 - -
Trre7g00634 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 174 236 IPR017930 -
Trre7g00634 284 MobiDBLite consensus disorder prediction 152 173 - -
Trre7g00634 284 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 227 IPR045279 GO:0009736
Trre7g00634 284 SMART REC_2 14 124 IPR001789 GO:0000160
Trre7g00634 284 ProSiteProfiles Response regulatory domain profile. 15 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00634 Trre-Chr7 4092562 4093896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00634 10 236 Response Regulator Gene Family AT2G25180 33.884 3.56e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Trre7g00634 Response_reg 8.2e-12 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00634 - - tpra:123923208 397.512