Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00625 ATGATGTTGAATCGTTCGTCAAATGTTCCGGCTGAAGCCGGTGGTTGTCCAAATGAAGAACTATGGAAAGCATGTGCTGGACCATTGGTCGATGTTCCTCGTGCTGGTCAAAGGGTTTACTATTTCCCTCAAGGACACATGGAGCAATTAGAGGCTTCTACTAATCAAGAACTGAATCAGAATATCCCTTTGTTGAAACTTCCTACGCAGATCCTTTGTCGCATCGTGAATATGAATTTATTGGCTGAACAAGAAACGGATGAGGTTTATGCGCAAATAACTTTGGTCCCGGAACCAAATCAAGATGAGCCTACAATCCCTGACCCGGTAAACGATGAACCTCCGAGGCCGAAAATTCACTCATTCTGCAAGATCTTAACTGCTTCGGATACCAGCACACATGGTGGCTTCTCTGTTCTAAGAAAACATGCCACTGAATGCCTTCCTCCTTTGGATATGTCACAACCGACACCAACTCAAGAATTGGTTGCCAAGGATCTTCATGGTCATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACCTACTCACAACTGGATGGAGTACTTTTGTGACTTCTAAAAGATTAGTTGCTGGAGATACCTTTGTGTTTTTGAGAGGGGAAAACGGGGAATTACGTGTTGGAGTGAGGCGTCTTGCTCGTCAGTCAAGTAACATGCCATCGTCTGTGCTTTCTAGCCAAAGCATGCACCTTGGAGTTCTTGCAACTGCCTCCCATGCCGTTGCATCACAGACTCTTTTTGTTGTATATTATAAGCCGAGGACGAGCCAGTTCCTCGTAAGCGTGAACAAGTACTTGGAAGCTGTGAACAATAAGTTTACTGTCGGCATGAGGTTCAAGATGAAGTTTGAGAGTGATGATTCTGCTGAGTCTGACAAAAGATTTTCCGGTACCATAGTTGGAGTGGAAGATATGTCTCCCCATTGGCCAAATTCAAAATGGCGATCACTTAAGGTTCAATGGGATGAACCTTCAGCTATTGCAAGACCTGACAGGGTTTCACCATGGGAGATAGAACCATTTGTTTCCTCAGCTTCTACACCCTCAGTTCAACCTACGGCTGCGAGGACTAAAAGGCTTCGACCACTGAATGAAATTCCCGACGTTGACACAACATCGGCTGCCTCTATTTACTGGGATGCTAGATTGACGCAGACTGATAAGACACAACGTAGCGTTTTAGCTGAAAGTCAAAAAAGCGATATTGGTATGTGGCATCATAAGAAAATGGATATTATGAATAGTAAAAGCAACAACAACCCTTTATTTAGAAATCATACAGAAGGAAGTTGGCTATCTTCTCCCCGTTCTAGCTGTCCTTCTCATTTGCTGCACGACACAACCGATGATAGCAAGAGTGTCTCCGCCTGGCCTGTTTCACAGTCTCAATCGTCTACAGTAAATGTTGATCATGTGCTCGATCAAGTTGATAAGGACAACAAAGCTGAGACTGGTACAAGTTATCGATTGTTTGGAATCGATCTTAATGATCATTCCAAAAATTCGGCTGCTCTAGGGAAATCATCATCACATGTGGCAAACTTAACTGGAGTTACCACTGAAGTTAGTACCAGCACTTTGTCCAGCATCGATACTGCCCGTAAGTCTGATATCTCAAAGTCTGCTTCTATGGAGAAGAAACAAGAATTGCAACTAGTATCACCAAAGGAGACTCAAAGCAAGCAAATTTGTAGCAGAAGTCGCACCAAGGTTCAAATGCAGGGTATTGCAGTGGGACGCGCTGTGGATTTGGCAACAATGAATGGGTATGATCAACTTATTGGTGAATTGGAAGAGTTGTTTGACATCAAGGGACAGCTTCAACATCGGAATAAATGGGAAATTGTCTTCACCGATGATGAAGGAGATATGATGCTCGTAGGAGATGATCCATGGCCTGAATTTTGTAACATGGTGAGACGAATTTTCATCTGTTCAAGCAATGACGTGAAGAAGATGAAGTCGGGAAGCAAGCTTCCAATTAATGCTCCCATCGAGGAAGGGACTGTAATAAGTCCCGACACAAGTGAAACATGA 2070 0.4372 MMLNRSSNVPAEAGGCPNEELWKACAGPLVDVPRAGQRVYYFPQGHMEQLEASTNQELNQNIPLLKLPTQILCRIVNMNLLAEQETDEVYAQITLVPEPNQDEPTIPDPVNDEPPRPKIHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQPTPTQELVAKDLHGHEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGENGELRVGVRRLARQSSNMPSSVLSSQSMHLGVLATASHAVASQTLFVVYYKPRTSQFLVSVNKYLEAVNNKFTVGMRFKMKFESDDSAESDKRFSGTIVGVEDMSPHWPNSKWRSLKVQWDEPSAIARPDRVSPWEIEPFVSSASTPSVQPTAARTKRLRPLNEIPDVDTTSAASIYWDARLTQTDKTQRSVLAESQKSDIGMWHHKKMDIMNSKSNNNPLFRNHTEGSWLSSPRSSCPSHLLHDTTDDSKSVSAWPVSQSQSSTVNVDHVLDQVDKDNKAETGTSYRLFGIDLNDHSKNSAALGKSSSHVANLTGVTTEVSTSTLSSIDTARKSDISKSASMEKKQELQLVSPKETQSKQICSRSRTKVQMQGIAVGRAVDLATMNGYDQLIGELEELFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSNDVKKMKSGSKLPINAPIEEGTVISPDTSET 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00625 689 SUPERFAMILY CAD & PB1 domains 578 653 - -
Trre7g00625 689 Pfam AUX/IAA family 541 613 IPR033389 -
Trre7g00625 689 Pfam AUX/IAA family 620 661 IPR033389 -
Trre7g00625 689 SUPERFAMILY DNA-binding pseudobarrel domain 113 251 IPR015300 -
Trre7g00625 689 FunFam Auxin response factor 283 356 - -
Trre7g00625 689 FunFam Auxin response factor 572 665 - -
Trre7g00625 689 Gene3D - 573 665 - -
Trre7g00625 689 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Trre7g00625 689 ProSiteProfiles B3 DNA-binding domain profile. 122 224 IPR003340 GO:0003677
Trre7g00625 689 SMART B3_2 122 224 IPR003340 GO:0003677
Trre7g00625 689 FunFam Auxin response factor 120 224 - -
Trre7g00625 689 Pfam Auxin response factor 248 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Trre7g00625 689 Pfam B3 DNA binding domain 122 222 IPR003340 GO:0003677
Trre7g00625 689 Gene3D - 119 223 IPR015300 -
Trre7g00625 689 ProSiteProfiles PB1 domain profile. 577 658 IPR000270 GO:0005515
Trre7g00625 689 CDD B3_DNA 120 222 IPR003340 GO:0003677
Trre7g00625 689 Gene3D - 283 358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00625 Trre-Chr7 3985223 3989195 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00625 19 670 B3 DNA Binding Superfamily AT4G23980 58.626 0.0 706
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Trre7g00625 AUX_IAA 9.9e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00625 K14486 - gmx:100779003 1063.14