Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00601 ATGGAACAGGATCAATGTTGGATACAAACAAAGAGAAAGTACTCAATGAGTAATTCAAATCTTATTAACCCTTCTTCTTCTTCTTGTTATGGTGATTCGTGGGAAGAACAAGCTTTTGCTGAAGATGCAGCTGGAGCTTCACTTGGTGGATGTATATGGCCACCAAGATCATATTCTTGTAGCTTTTGTAGAAGAGAGTTTAGGTCAGCACAAGCATTAGGTGGTCATATGAATGTTCATAGAAAAGATAGAGCAAGACTAAAAGAATCTTCTAGTCCACAAAATGAAAAAATTCTTTATCATCATCATCATGATCTTGAAAATCATCTTCAAAAGCCAATTCAAAGTGCTAATTCTTTGGCTTATAATAACCTATTCCCTAATTCTTCTCTTTGTGGTTTGGTTTATAAAACTAACCCTAATTATGATCTTGATCATTTTGTTGCTTCAACTTCATCACCCTCACCTTCTAAAGCTTTATTAAGAGAGGAAACCCTAATTCCATTTTATGATTCTTCTATTCCTCATAAGATGATTTCTCCTCATAATTCTTCTGAATCGTGGCGAAATTTATCTGCAGATGATAGATTATGCTCAACAAATTTTCAACTTGAAGTTGATAATATTGATGAAAAAGTCTCCAAGGGATTATTGGATTCTAGGTTTAGAGGTAAAGGAGGTAATAATGATGATGATAGTGATGTAGCTATGAGCTTGAATTTGGTTTTGTGTAGAGCTCATCCATTTGTGGAATTTGAAAGTGCTAAGGAGGAGGAAGAAGATTTCAATTGCAAGAAGAGGAAAAAAATAGATTATTCCTCAAATTTATTATTCTCAAAGTCAAGCTCTTTTGATAGACAACAACTTATCCAAGCAAACATGTTTGAGTTTAACCCTAATTCCATTGAAGAGCTAGATCTGGAGTTAAGACTTGGTTCAAAGTCCAAGGTATAA 954 0.3396 MEQDQCWIQTKRKYSMSNSNLINPSSSSCYGDSWEEQAFAEDAAGASLGGCIWPPRSYSCSFCRREFRSAQALGGHMNVHRKDRARLKESSSPQNEKILYHHHHDLENHLQKPIQSANSLAYNNLFPNSSLCGLVYKTNPNYDLDHFVASTSSPSPSKALLREETLIPFYDSSIPHKMISPHNSSESWRNLSADDRLCSTNFQLEVDNIDEKVSKGLLDSRFRGKGGNNDDDSDVAMSLNLVLCRAHPFVEFESAKEEEEDFNCKKRKKIDYSSNLLFSKSSSFDRQQLIQANMFEFNPNSIEELDLELRLGSKSKV 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00601 317 SUPERFAMILY beta-beta-alpha zinc fingers 55 84 IPR036236 -
Trre7g00601 317 SMART c2h2final6 58 80 IPR013087 -
Trre7g00601 317 PANTHER OS07G0101800 PROTEIN 30 314 - -
Trre7g00601 317 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Trre7g00601 317 Gene3D Classic Zinc Finger 55 118 - -
Trre7g00601 317 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Trre7g00601 317 Pfam C2H2-type zinc finger 58 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00601 Trre-Chr7 3838466 3839419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00601 33 142 C2H2 Transcription Factor Family AT2G37740 50.000 9.40e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre7g00601 zf-C2H2_6 1.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00601 - - cam:101506400 399.823