Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00588 ATGTCTTCCTTCGCTTCCTTCTCCTCCGAAAACCGCCAAGAATTTGAATCCAGATATACTACTGATACAAAGAAGAGGCGTTATAATGTGTTCTTGAGTTTCTGTGCTCGAGACGCGGGTACTTTTCCTTCGCGTCTCGATATGGCTCTTAGTTCTGAAGCTGGAATCGTTGTTTTTGGGGATGTTGAGAGGGTTCAACATGGAGAATGGGAAAAGTTGGCGCTGGATGTAATTGAAGACTGTAAAATTGCTATAGTCATATTTTCAACTAATTATGTTAATTCGAGTTTGTATTTAAAAGAATTGGAGAAAATAACGGAGTGTTGCCGAACCTCAGATTTGACTGTTCTGCCTGTGTTCTATCATAGCGTCCATTCTTCCTACGGATGTTCAGAGGGAGGTATGCTCGAAGGAGGTGCTTTTCATTATTTTCTAGATAGAATGATGGTGGAGGGAATCTCTGAAGAGGAAGACAAGTTCATCACTTGGGTAACAGGGATCACTAAAGCTACCAAATATTTAGGACCAAGTTATCTCGTACACAAACCCATATTCAAGTATGAAGGTGAATATATTAAGGATATAGTTCAACATGTTATGCGTGTGCTAAACAAGAGAGACTTGTTTGCGGCTTCCTATACACCTAGTGTAAAATCCGTTGCGCAAGATATGATTCAACTATTGAAACAATCAAAATCTCCTTTCCTACTGGGGATATGGGGGATGACAGGGATCGGTAAATCAACCATTGCCACGGCTATTTATAATCAAATTGGTCTGTTTTTTGAGCACAAATGCTTCCTCGAAAACGTTGGGGGAGTTTGGGAAACAAATAGTGGCCAACTTTCATTACAAGAGGAACTTCTTTTTTATATTGACGGACCAACTGAAATAAAGATACCTACAGTTGAATCAGGAACAGTGATGATAAAAGAAAGACTTCAACATAAAAGGGTACTGCTTGTACTTGACAATGTTGATAAGGTGGAGCAGCTGAATGCTTTGTGCAGAAGCCGGGATTGGTTTGGAGCAGGTAGCAAAATAATCATCATGACAAAAAATAGATGTCTACTCAGGGAGCATGGAGTTGACCATATACACAAGGTGAAAGAACTGAACGAAAGTGAATCCCTTGATGTTTTAAAATGGAGTGCATTCAGCCGAGCAACATCTCCTCGAGCGAATTTTGGTGAACTTTCTCGACAGTTAGTTGCTTATTCTGGGGGATGGCCTCTTGCTCTTAAAGAACTTGGGAAGTTTTTGCATGGAAAGGATGTACCTGAGTGGAAAGGTGTGTTGAGGAGTCTCCAAAGATTTTCCATTCCAGCTCCACGACTACTAGAAGCTCTAGAAAAGAGTTTTAGCGATTTGAGTGATGAAGAGAAACACATATTCCTTGATATAGCGTGTTTCTTTAATAGTATGAACCAAAATGATGTACTTCAAACATTAAATAGGCCAACACAATCCGAAGGGTTTCAAATAAATCTCCTTGAAGACAAGAGCTTTGTAACCATTGATGAGAATAACAACCTTGAAATGCATGTTCTGCTACAAGCCATGGCAAGAGATATCATAAAGAGAGACTCAAGTAGTAAGACTGATCAGCCAAAGATGTACGATGTATTCCTGAGTTTTAGAGGGGAAGACAATCGGGCAAAGTTCGTGTCACATCTTTATTCCTCTCTTCAAAATGCGGGAATTCATGTTTTCAGAGACGAGGATGAGATTCAACGAGGAGATCTTATCTCAGTCTCACTGTTGCAAGCAATTGGACGGTCTAGAATTTCTATCGTTGTTTTGTCTATAAATTATGCTAATTCAAGATGGTGTATGTTAGAGTTGGAGAAGATCATGGAAATTGGCAGAGTCAGAGGTCTGGTGGTTGTGCCAGTGTTCTATGAGGTAGATCCCTCAGAAGTACGTCATCAGAAAGGTCGGTTTGGAAAGGCTTTTGAAGATCTCATATCAACAATCTCAGTGGACGAATCCACTAAGAGTAATTGGAGAAGAGAACTCCTTGATATTGGTGGCATAGCAGGGTTTGTACTCATAGATTCCAGGAATGAAAGTGATGATATCAAGAATATTGTTGAACATGTTACGCATTTGCTAGATAGGACAGAGTTATTTGTTGCTGAACATCCAGTGGGAATTGAATCTCGTGTGCAAGCTGCAACTGAGCTATTAAACATCCAAAAGGCAGAAGATGTTTTAATTCTAGGGATATGGGGCATGGGGGGTATGGGAAAAACAACCATTGCCAAAGCCATTTATAATCAAGTTGGGAGCAAATTTGAGAGAAGGAGCTTCCTTCTGGATATTAGGGAATTTTGGGAGACAGATACTAATAAAGTTTCTCTACAGCAACAGGTACTTTGTGATGTTTACAAAACAACATCATTCAAGATACGTGACATCGAATCGGGGAAAAATATATTGAAGGAAAGACTTGCCCAGAACAAGGTACTTCTTGTGCTTGATGATGTGAATGAATTGGACCAGCTCATGGCTTTGTGTGGAAGCCGCGTATGGTTTGGTCCGGGGAGTAGAATAATCATCACAACAAGGGATATGCATCTTCTTAGATCGTGTAGAGTTGATCAAGTGTATGCAATAAAAGAAATGGACGAAAGAGAATCTCTTGAGCTTTTCAGTTGGCATGCATTCAAGCAACCAAGTCCAATAGAAGATTTTGCTACACATTCAAAAGATGTAATTGCTTATTCTGGGAGATTGCCACTAGCACTTCAAGTCATTGGATCCTATTTGTCTGACTGTGAAATAACAGAGTGGCAGAAAGTTTTGGAGAAACTCAAATGTATTCCCCATAATCAAGTACATAAGAAGCTAAAAGTAAGCTTCGATGGTTTAAAAGATGATACGGAGAAACAAATATTACTTGATATAGCTTGTTTCTTTATTGGTAGAGATCAAAATGATGTAATACGAATATTAAATGGGTGTAGATTTTTTGCTGATATTGGAATTAAAGTCCTTGTAGAGCGAAGCCTTGTAACTGTTGACAATAGGAACAAGCTTAGAATGCATAATTTGTTAAGAGACATGGGAAGACAAATAATTTACGAGGAATCACCGACAGATCCTGAGAAGCGCAGTAGGTTGTGGTGCCACGAGGAAGTATTTGATATATTAGCAAAGTGCAAGGGAACAGAAGCTGTCAAGGGACTGGTTTTGGAGTTTCCAAAAAAAGATTGTCTGGAAACCAAAGCATTTGAGAATATGAATAAACTTAGATTGCTTCGCCTCGCTGGGGTGAAGCTTAAGGGAGATTTTCAATATCTTTCTGGAGATCTTAGGTGGTTGTATTGGCATGGATTTCCAGAAACCTACGCTCCTGCTGTATTTCAGCAGGAAAGTCTAGTTGCCATTGAATTAAAATATAGTAAGCTCAAACAAATATGGAACCAGAGCCAGATTCTAGAGAATCTTAAAATTCTTAATCTTAGTCATTCTCTGGATTTGACTGAAACCCCAGATTTTACATACTTGCCGAATCTTGAAAAGCTAGTACTAAAAAACTGTCCAAGTTTGTCTAAGATCTCCCATAGCATTGGATTTCTGAGTAAACTTCTTCTGATAAATTTGTCAGATTGCACAGGTCTTCGGAAACTTCCGCGAAACATCTACAAATTAAAATCTCTAGAAACTTTGATTCTTTCAGGATGCTCCAAGATTGACAAATTGGAGGAGGACTTGGAACAGATGGAATCATTGATTACTTTGATTGCAGATAAGACTGGCATAAGAAAAGTGCCATTTTCATTAGTAAGACTGAAAAGCATTGGATATATTTCTTTTCATGGCTTGGAAGGATTTTCACTTGATGTATTCTCTTCTCTCATTCGGTCTTGGATGTCGCCATCAAATAACGTGTTATCCCTAGTTCAAAGATCTACCGCCAAGTCATCTCTTGGTACTTTCAAGGACATTCTAAATCTTCGAAGTCTTTTTGTGGAGTGTGGCTCATATCTACAACTAAATCAAGATGTATCAAGAATTTTGGATGTATTAAAAGCCACAAATTGTCAGAAATTGGAAGCAAGTGCAAATGCGTCTTCATCACAGGTCTCTAAAATGTATGTCTCTCCTATAATTGATGATTGCCGCAGTCAAGTTTGTTCTTCAGTGTCAAAGAATTACTTAAAATATCTATTAATTCAGATGGGATCAACACACCAATTCCCCAATATAGCCGAAGACAACATTTCACAGACTCCAGACGGAACTTGGGATTCGTTTTTGCACCCATGTGACAATAATTCCAAATGGTCAACCTTCAGCGGCAATGGTTGTTCCATAATATTTGATCTCCCAACAATGAAGGAGAGTACCCTGAAGAGCATGACGTTGTCTGTTGTCTATTACTCTTGCTCGGAGAACATAAGATCAGAATGTTGCCATGGTGTCTTAATCATAAATTACACAAAGACAACCATTCATGCATATAAAAGAGATACACTAACCTCCTTTGATGATGAGGATTGGCAGATCATAACCTCAAATCTAGAACCTGGTAACAAAGTGGGGATTGTGGTTGTTTTTGGGGAGGGTTTCATTGTTGAGAAGACTACAGTATCTCTCTTATATGCTGATGTCGTGGGACCGGTACAGTTACTACTGCATGACCTTGACCAGCCTGCAGAGGCAGTAGCTGAGGATATTTGTGCAGCTGAAGCAGAGAGTGAGGAGCAGGTATCTCTACCTGATCGTCAGCCTAATCTGCAAGCAGCAGCAACACCAGAGACCATTGGACCGGTTCTAGGAGCTCAGATTTTGGATGCCCTCAAAGAGCTCAGGGCTGATTTTGCCAGACAAGATCAGACAGTTACTGCTAGGTTGAGTGCATTAGAGGTGAGATTAGAGGAGCTTGAGGATGTCATTGCCCAGATACCGCGTGGATCGAGTTCTATTTTTAGGTTTCTTTCAATGTTGCTCTTCATTTTTTTGTTTTGTTGGTTTGTTTTTCTATAA 4995 0.395 MSSFASFSSENRQEFESRYTTDTKKRRYNVFLSFCARDAGTFPSRLDMALSSEAGIVVFGDVERVQHGEWEKLALDVIEDCKIAIVIFSTNYVNSSLYLKELEKITECCRTSDLTVLPVFYHSVHSSYGCSEGGMLEGGAFHYFLDRMMVEGISEEEDKFITWVTGITKATKYLGPSYLVHKPIFKYEGEYIKDIVQHVMRVLNKRDLFAASYTPSVKSVAQDMIQLLKQSKSPFLLGIWGMTGIGKSTIATAIYNQIGLFFEHKCFLENVGGVWETNSGQLSLQEELLFYIDGPTEIKIPTVESGTVMIKERLQHKRVLLVLDNVDKVEQLNALCRSRDWFGAGSKIIIMTKNRCLLREHGVDHIHKVKELNESESLDVLKWSAFSRATSPRANFGELSRQLVAYSGGWPLALKELGKFLHGKDVPEWKGVLRSLQRFSIPAPRLLEALEKSFSDLSDEEKHIFLDIACFFNSMNQNDVLQTLNRPTQSEGFQINLLEDKSFVTIDENNNLEMHVLLQAMARDIIKRDSSSKTDQPKMYDVFLSFRGEDNRAKFVSHLYSSLQNAGIHVFRDEDEIQRGDLISVSLLQAIGRSRISIVVLSINYANSRWCMLELEKIMEIGRVRGLVVVPVFYEVDPSEVRHQKGRFGKAFEDLISTISVDESTKSNWRRELLDIGGIAGFVLIDSRNESDDIKNIVEHVTHLLDRTELFVAEHPVGIESRVQAATELLNIQKAEDVLILGIWGMGGMGKTTIAKAIYNQVGSKFERRSFLLDIREFWETDTNKVSLQQQVLCDVYKTTSFKIRDIESGKNILKERLAQNKVLLVLDDVNELDQLMALCGSRVWFGPGSRIIITTRDMHLLRSCRVDQVYAIKEMDERESLELFSWHAFKQPSPIEDFATHSKDVIAYSGRLPLALQVIGSYLSDCEITEWQKVLEKLKCIPHNQVHKKLKVSFDGLKDDTEKQILLDIACFFIGRDQNDVIRILNGCRFFADIGIKVLVERSLVTVDNRNKLRMHNLLRDMGRQIIYEESPTDPEKRSRLWCHEEVFDILAKCKGTEAVKGLVLEFPKKDCLETKAFENMNKLRLLRLAGVKLKGDFQYLSGDLRWLYWHGFPETYAPAVFQQESLVAIELKYSKLKQIWNQSQILENLKILNLSHSLDLTETPDFTYLPNLEKLVLKNCPSLSKISHSIGFLSKLLLINLSDCTGLRKLPRNIYKLKSLETLILSGCSKIDKLEEDLEQMESLITLIADKTGIRKVPFSLVRLKSIGYISFHGLEGFSLDVFSSLIRSWMSPSNNVLSLVQRSTAKSSLGTFKDILNLRSLFVECGSYLQLNQDVSRILDVLKATNCQKLEASANASSSQVSKMYVSPIIDDCRSQVCSSVSKNYLKYLLIQMGSTHQFPNIAEDNISQTPDGTWDSFLHPCDNNSKWSTFSGNGCSIIFDLPTMKESTLKSMTLSVVYYSCSENIRSECCHGVLIINYTKTTIHAYKRDTLTSFDDEDWQIITSNLEPGNKVGIVVVFGEGFIVEKTTVSLLYADVVGPVQLLLHDLDQPAEAVAEDICAAEAESEEQVSLPDRQPNLQAAATPETIGPVLGAQILDALKELRADFARQDQTVTARLSALEVRLEELEDVIAQIPRGSSSIFRFLSMLLFIFLFCWFVFL 1664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00588 1664 Gene3D Ribonuclease Inhibitor 1068 1244 IPR032675 -
Trre7g00588 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 220 468 IPR027417 -
Trre7g00588 1664 SUPERFAMILY Toll/Interleukin receptor TIR domain 21 127 IPR035897 -
Trre7g00588 1664 ProSiteProfiles TIR domain profile. 538 705 IPR000157 GO:0007165
Trre7g00588 1664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 702 970 IPR027417 -
Trre7g00588 1664 SUPERFAMILY "Winged helix" DNA-binding domain 447 530 IPR036390 -
Trre7g00588 1664 SUPERFAMILY "Winged helix" DNA-binding domain 946 1052 IPR036390 -
Trre7g00588 1664 Gene3D - 21 207 IPR035897 -
Trre7g00588 1664 ProSiteProfiles TIR domain profile. 26 149 IPR000157 GO:0007165
Trre7g00588 1664 Pfam NB-ARC domain 722 945 IPR002182 GO:0043531
Trre7g00588 1664 Pfam NB-ARC domain 226 441 IPR002182 GO:0043531
Trre7g00588 1664 Coils Coil 1233 1253 - -
Trre7g00588 1664 Pfam TIR domain 540 702 IPR000157 GO:0007165
Trre7g00588 1664 Pfam TIR domain 28 137 IPR000157 GO:0007165
Trre7g00588 1664 SUPERFAMILY Toll/Interleukin receptor TIR domain 531 681 IPR035897 -
Trre7g00588 1664 SMART till_3 539 679 IPR000157 GO:0007165
Trre7g00588 1664 SMART till_3 27 177 IPR000157 GO:0007165
Trre7g00588 1664 FunFam Disease resistance protein (TIR-NBS-LRR class) 536 707 - -
Trre7g00588 1664 SMART AAA_5 737 877 IPR003593 GO:0016887
Trre7g00588 1664 SMART AAA_5 233 372 IPR003593 GO:0016887
Trre7g00588 1664 Gene3D - 532 703 IPR035897 -
Trre7g00588 1664 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 540 1371 IPR044974 GO:0006952
Trre7g00588 1664 Gene3D - 371 457 IPR042197 -
Trre7g00588 1664 Gene3D - 875 959 IPR042197 -
Trre7g00588 1664 PRINTS Disease resistance protein signature 910 924 - -
Trre7g00588 1664 PRINTS Disease resistance protein signature 740 755 - -
Trre7g00588 1664 PRINTS Disease resistance protein signature 817 831 - -
Trre7g00588 1664 PRINTS Disease resistance protein signature 1217 1233 - -
Trre7g00588 1664 SUPERFAMILY L domain-like 1079 1439 - -
Trre7g00588 1664 Gene3D - 208 366 IPR027417 -
Trre7g00588 1664 Gene3D - 704 871 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00588 Trre-Chr7 3749154 3756309 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00588 70 542 WRKY Transcription Factor Family AT4G12020 28.395 5.22e-39 158
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00588 - - mtr:11411578 2114.73