Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00580 ATGTCTTCTTCCCAAATCCATCCATGTCCTTTTGTTTCGCATCTATACAACTCTCTTAAATCAGAAGCTGGAGTTGCTGTTTTCTGGGACGACGAAAGAACAACATATGATCTTATTGTTGTTCCTTTGTTCTACGATGGTATCTACCCCTCCGACGGAACTTCTCATAGAAATTTGTATGCAGACAGTGATTTTGTGTATAGAATGTTGATCGGGGAAACCGAAGACAAGTTCATGATTTGGATGGCAGCCAATAGTCAAGCTACTACATATCCAGGATCAATTGACATCTTAAACAAATATGGGAATGAAAGTGAATATATTAAGAATGTAGTTGAACATGTTACTCGTGTGCTAAACAAGAGAGACTTGTTCAGTGGTTATACAGAGAGCACAGCTTCTCGTGCCGAAGATGTGATTCAATTGTTGAAACAATCAACAGGTCCTCTCGTAATAGGAATATGGGGGATGACAGGGATTGGCAAATCAACTATTGCCAAAGCCATTTATGAACAGATTGGTCCCTATTTTGAGGACAAGAGCATGTTCGAAAACATTCAGGGTGATTGGAAAAAAAATAATGCTGATCGACTTCATTTCACAGCGAATTTTTTTAATATCGGTGTATCAACTAAAATGAAGATACATACAATTGAATCAGGAAAGGTGGTTTTAAACGAAATAATTGTACAGAAAAGAGTACTTTTTATACTTGACAATGTTGATAAGTTGGAGCAGCTAGATTATGTGCGTCGTGAATTGTTCGGAAAAGGTAGCAAATTAATAATCACTACAAGAAATAGGCATCTACTTAAGACACCCAAAGTTGATTGTATATATAGAGTGAAAGAACTGGATGAAAGTGAATCGCTTAAGGTTTTTAATTTTGACGCATTCCGCCAAGCAACAAGTCCTGGAGAAGATTTTGGCGAACTTTCCAGACAGATAGTTGCTTATTCTAGGGGATTGCCTCTTGCTCTTGGAGAACTTGGGTGGTTTTTGCGTGGAAAGGAAATACTTGAGTGGAAAGGTACTTTGAGGAGCCTCGAAAGATTTTCCATTCCAGTTCCAGAACTACTAAAAGCTCTAGAAAAGATTTTTAGTGATTTGAGTAAACAAGAGGAACAATTATTCCTTGATATAGCATGTTTCTTTATCGGGATGAACCAAAATGATGTACTCCAAACATTAAATGATAGGTCAACACAATGCACAACTCTTCAAATAGGTCTCCTTGAAGACAAGAGCCTTCTAACCATTGATGAGAATAACAAGCTTCAAATGCATGTTCTGCTACAAGCCATGGTAAAAGATATCATTAAGAGGGAACCAAGTAATATGACTAATCAGCCAAAGATAACTAAGGGTCTGGTGGTTGTGCCAGTATTCTACGAGGTAGATCCCTCTGAAGTACGTCATCAGAAAGGTGAGTTTGGAGAAAAATTTGATGCTCTTTTATCAAAAATCTCAGTGGATGAATATACAAAGAGTAATTGGAGAAGAGACCTCATTGATATTGGTGGCATAGCAGGGTTTGTACTCATAGGTTCCAGGTTATTTGAATTTTCTCTTAGAATATTGTTTGTGATGCTTTAA 1596 0.3734 MSSSQIHPCPFVSHLYNSLKSEAGVAVFWDDERTTYDLIVVPLFYDGIYPSDGTSHRNLYADSDFVYRMLIGETEDKFMIWMAANSQATTYPGSIDILNKYGNESEYIKNVVEHVTRVLNKRDLFSGYTESTASRAEDVIQLLKQSTGPLVIGIWGMTGIGKSTIAKAIYEQIGPYFEDKSMFENIQGDWKKNNADRLHFTANFFNIGVSTKMKIHTIESGKVVLNEIIVQKRVLFILDNVDKLEQLDYVRRELFGKGSKLIITTRNRHLLKTPKVDCIYRVKELDESESLKVFNFDAFRQATSPGEDFGELSRQIVAYSRGLPLALGELGWFLRGKEILEWKGTLRSLERFSIPVPELLKALEKIFSDLSKQEEQLFLDIACFFIGMNQNDVLQTLNDRSTQCTTLQIGLLEDKSLLTIDENNKLQMHVLLQAMVKDIIKREPSNMTNQPKITKGLVVVPVFYEVDPSEVRHQKGEFGEKFDALLSKISVDEYTKSNWRRDLIDIGGIAGFVLIGSRLFEFSLRILFVML 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00580 531 Gene3D - 431 521 IPR035897 -
Trre7g00580 531 Gene3D - 284 370 IPR042197 -
Trre7g00580 531 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 35 445 IPR044974 GO:0006952
Trre7g00580 531 SUPERFAMILY "Winged helix" DNA-binding domain 362 443 IPR036390 -
Trre7g00580 531 SUPERFAMILY Toll/Interleukin receptor TIR domain 453 511 IPR035897 -
Trre7g00580 531 Pfam TIR domain 447 503 IPR000157 GO:0007165
Trre7g00580 531 SMART AAA_5 148 286 IPR003593 GO:0016887
Trre7g00580 531 Pfam NB-ARC domain 137 355 IPR002182 GO:0043531
Trre7g00580 531 Gene3D - 107 277 IPR027417 -
Trre7g00580 531 PRINTS Disease resistance protein signature 320 334 - -
Trre7g00580 531 PRINTS Disease resistance protein signature 228 242 - -
Trre7g00580 531 PRINTS Disease resistance protein signature 151 166 - -
Trre7g00580 531 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 138 381 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00580 Trre-Chr7 3690530 3693258 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00580 31 446 WRKY Transcription Factor Family AT4G12020 29.621 3.22e-32 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00580 - - mtr:11411578 427.172