Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00546 ATGACGACTTCATATCATCCTGTGAAAGATATAACAAAGAAGAAACAAACATGGAGACTTGCTGTGATGGTCGATGACTTATGGACTGTTTATAAAGGAGAAGATGAAGATCATCTTGAGATGTTGCTTAAGGATGTCAATGGAGATTGTATCCAAACTTCTATAAACAAGGATGATGTTGAGGAATGGAAATCCAAACTTAAAGAAGGAAAAACCTATGAAATGAGTAACTTTCGAGTCAGTGATAATGACTACCAGTTCAAAATGACAGAACACAAGTGCAAGTTAACTGTGGTTGCAGCCACAACAGTTGCTGAGTTAGAAATACCTGATATGTCTGTTTCTCCCTTTAAGCTCAAGGATTTTGCTGACATCATTAAAGGAAGTTATCGTAGAGATCTGTTAGTTGATGTCATTGGATATGTGGTTGAGCTTGGAAAATGTGTCGCTGCATCTGGCAGTAGAAAAGGCAACATTGCATTCACTATTAGAGATTTAAGTGACAATACAGTTGATTGTACTCTATGGGATTCGTTATCTGTGAAATTTCTGGATGCATACAACAGTCATAATGATGCTGCTCCTTTTGTTTTTATTATGAGACATGCGCGCATTAAGGAAGCTCAAGGCCAATACCCATTACAATTCACTAATGTTTGGAGTGGAACAAAATTGCTGTTTGATGATAACATACCCGAAATCACTGCATTCAAGGCTAGCTTGCCAAAGGATTTGTACTTTGCATCCCAGACTTCCAACATAGGATCTGTTTCAACTCAGTTTTACGCCCAGAGTAGCCAGGGATCCCAATACTCTTCTGATGATCTTTTCATGAAAAATGCACGTGTTATTCGTTTGGGAGATATGAAAAAGCTCAAGACAGACACTTTCTGTGTTACCGTTGTGAACACGAACCAAGTGCTGGTCTCAGCTGGAGGCTGGTTTTTCCGTTCATGTGAGCAGTGTAATAAGAAGGCTGATGGTCTTAAACCTCCATTTGTTTGTAAGGAAGGACACCAATCCTTAGATCCGCCAGTCAAGTATAAGCTGGATGTCGAAGTCATTGATGGTGATGACACTGGTACCTTCATTTTCTGGGATAGTTCATTGGATGAGCTATTGGGCATCACCGCTGCTGACCTACTTGCTGAAATGGAGAAGAAAGGAAAAACAGACCCTCGCCATTACCCTGATAATCTTGACGATCTGATGGATCGCACTTTTGCTTTTCGAGTCAAATGGCAATATCAGTGGAAGAAATCATCGGTTATCTTCTGCAAAGACAACAAAGAATTGGTCGCTAAGATACAGGAACAATTGCCAAATGCTGAGACCTCAACTAAGGAAATTGATTACATGTCTCCTACTGTTACACCAATGTGTGATGTTCCAATTAAATTCCCAGTTCAGACTTTTACTGCTGAAGATATATCTAAGTTTGATCTCCTTGATGATGCTATCTTATCAACTCCAAATGTTTCTGCTACTGCTGAAACAGATCCTCTTGTCCCAACTAAAAAAGTAGTTGCTGCGCAAGTTGTTCCTATTGTCCCAACTAACATAGATGTTGCTGATGAAGTTGATCCAGTTGTCCCAGCTCAAAAAACTCCTGCTGCAAAAAGGACTGCAAGGCAAAAATCATATGATGATCGCGTTGATGCACAACTTTCATCAACCAAAACAGCCAGATGCATTAAGAAGGAGAAGTGA 1710 0.3988 MTTSYHPVKDITKKKQTWRLAVMVDDLWTVYKGEDEDHLEMLLKDVNGDCIQTSINKDDVEEWKSKLKEGKTYEMSNFRVSDNDYQFKMTEHKCKLTVVAATTVAELEIPDMSVSPFKLKDFADIIKGSYRRDLLVDVIGYVVELGKCVAASGSRKGNIAFTIRDLSDNTVDCTLWDSLSVKFLDAYNSHNDAAPFVFIMRHARIKEAQGQYPLQFTNVWSGTKLLFDDNIPEITAFKASLPKDLYFASQTSNIGSVSTQFYAQSSQGSQYSSDDLFMKNARVIRLGDMKKLKTDTFCVTVVNTNQVLVSAGGWFFRSCEQCNKKADGLKPPFVCKEGHQSLDPPVKYKLDVEVIDGDDTGTFIFWDSSLDELLGITAADLLAEMEKKGKTDPRHYPDNLDDLMDRTFAFRVKWQYQWKKSSVIFCKDNKELVAKIQEQLPNAETSTKEIDYMSPTVTPMCDVPIKFPVQTFTAEDISKFDLLDDAILSTPNVSATAETDPLVPTKKVVAAQVVPIVPTNIDVADEVDPVVPAQKTPAAKRTARQKSYDDRVDAQLSSTKTARCIKKEK 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00546 569 MobiDBLite consensus disorder prediction 534 554 - -
Trre7g00546 569 SUPERFAMILY Nucleic acid-binding proteins 117 247 IPR012340 -
Trre7g00546 569 ProSiteProfiles PAS repeat profile. 358 384 IPR000014 -
Trre7g00546 569 Gene3D - 108 246 IPR012340 -
Trre7g00546 569 SUPERFAMILY Nucleic acid-binding proteins 4 108 IPR012340 -
Trre7g00546 569 CDD RPA1_DBD_B_like 137 242 - -
Trre7g00546 569 Gene3D - 3 106 IPR012340 -
Trre7g00546 569 Gene3D - 262 439 IPR012340 -
Trre7g00546 569 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Trre7g00546 569 SUPERFAMILY Nucleic acid-binding proteins 301 417 IPR012340 -
Trre7g00546 569 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00546 Trre-Chr7 3435743 3438518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00546 1 381 Core DNA Replication Machinery Family AT5G08020 21.393 1.79e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00546 - - tpra:123884216 561.222