Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00541 ATGGCTGCCACATTCTATAACCTTAAGTCTGAATCTGGCTTGAAGAAGCTTAATGAGTACCTTCTTACACGCAGTCATATCACTGGTTACCAAGCTTCAAAGGATGATATCACTGTTTACGCTGCTCTGCCATCCGTTCCATCAAGTGAATTTGTGAATGTGGCCAGGTGGTACAAGCACATTGATGCTTTGTTGAGAATTTCTGGTGTTTCTGGCGAGGGATCCGGTGTAATTGTAGAATCTTCTCTCGTAGCTGAAGAGGCTGTTGCCACTCCTCCAGCTGCTGACACAAAGGCCACCGAAGCAGAGGATGAGGATGATGACGATGTGGATTTGTTTGGGGAAGAGACTGAGGAAGAGAAGAAGGCAGCTGAGGAACGGGCTGCAGCCGTGAAGGCATCTGGCAAAAAGAAAGAGAGTGGGAAATCATCTGTGTTGTTGGATGTCAAGCCATGGGATGATGAAACTGACATGAAGAAGCTTGAAGAAGCAGTGAGATCTGTTAAGTTGGAAGGCTTGTTTTGGGGTGCATCCAAACTTGTTCCTGTTGGGTACGGTATCAAGAAATTGCAAATTATGCTTACTATTGTGGATGATTTGGTTTCCGTTGACAACATGGTTGAGGATTATCTTACTGTTGAACCCATCAATGAGTATGTCCAGAGTTGTGACATTGTGGCCTTCAATAAAATATGTAAGGAATATTCCGATGGTTTTTCCTTTGCTTTGTTTTGGTCTTAA 741 0.4386 MAATFYNLKSESGLKKLNEYLLTRSHITGYQASKDDITVYAALPSVPSSEFVNVARWYKHIDALLRISGVSGEGSGVIVESSLVAEEAVATPPAADTKATEAEDEDDDDVDLFGEETEEEKKAAEERAAAVKASGKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVKLEGLFWGASKLVPVGYGIKKLQIMLTIVDDLVSVDNMVEDYLTVEPINEYVQSCDIVAFNKICKEYSDGFSFALFWS 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00541 246 Gene3D - 135 231 IPR014717 -
Trre7g00541 246 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 106 114 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre7g00541 246 MobiDBLite consensus disorder prediction 116 136 - -
Trre7g00541 246 SUPERFAMILY eEF-1beta-like 139 231 IPR036219 -
Trre7g00541 246 MobiDBLite consensus disorder prediction 100 115 - -
Trre7g00541 246 FunFam Elongation factor 1-delta 1 3 78 - -
Trre7g00541 246 FunFam Elongation factor 1-beta 1 like 136 231 - -
Trre7g00541 246 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 220 231 IPR001326 GO:0003746|GO:0005853|GO:0006414
Trre7g00541 246 MobiDBLite consensus disorder prediction 89 136 - -
Trre7g00541 246 CDD EF1B 140 231 IPR014038 GO:0003746|GO:0006414
Trre7g00541 246 SUPERFAMILY GST C-terminal domain-like 8 67 IPR036282 -
Trre7g00541 246 SMART EF1_GNE_2 142 231 IPR014038 GO:0003746|GO:0006414
Trre7g00541 246 Coils Coil 114 134 - -
Trre7g00541 246 Pfam EF-1 guanine nucleotide exchange domain 144 231 IPR014038 GO:0003746|GO:0006414
Trre7g00541 246 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 231 - -
Trre7g00541 246 Gene3D - 2 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00541 Trre-Chr7 3398338 3399988 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00541 3 231 Eukaryotic Initiation Factors Gene Family AT2G18110 83.043 7.61e-118 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00541 K03232 - mof:131155160 312.383