Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00533 ATGGCTAGTGATGAGGGTTTTGAAGGTTACCATGTCCCACAACAAAGTAGAAGAGATAAGCTTAGAGTTGTTGTGGCTCAAAACCAATCTCATGAACCTTTACTTCCTTTCTATGATTCTTCTTCTTTCATTACTAATTATAACCAACAACAAGGTTTGAAACAAAATTCTTGTTCTTCTTCTAATTCTATGAAGGATTTAGAATGTTCTAATTTGATGATGCGTTTTTCAAGAGAAGAAGGTAAACGGGTAATGAATAATATTTCTTCTTCTTCTAATAACTCTTGTTCTGTTTCCCATCATCCTTATTTTGAAACTTTGAATCATAATAATAATAATCAAGGAAATCATCATAACAATAATAATAATATTAATAACCCTTTTTTCTTTCAAGCACAAAACATTCAAAATCTTAGAAATTTTGATGAACAACATCATAGTAGTAGTACTAGTACTATGATGTTGAATAATCATGAACCTTTGTCTTTGTCACTTTCATCAAATAAAAGTGTTAGTAGTAATTTACCTTTGGAGTTGAATCTACAAAGATATGGATCTATGATTTATGGTGGTGGAGGTATGATTCAAGGGATGGTTGAAGGTGGAAGTGGTGGTTCAGTTCCATTTACTGGATATGCTTCTGTTTTGAAGGATTCTAGGTTTTTAAAACCAGCTCAAGAATTGTTAGAAGAGATTTGTGATGTTGGAAGAAGAGGTGTTTGTAGTGAGAAGATTGTTGTTTTGGCTGATTCATCTTTGATGATGGAATCACCTTTGGAAAGATTGAGTGAAGAAGATCCATTTGGTGATGATGGTCGCAATAAGTCAAGATTATTGACTATGCTTGATGAGGTTTACAAGAGGTATAGGCAATACTACCAACAGATGCAATCGGTAGTAACATCATTTGAGTATGTTTCGGGCCTCAACAATGCAGCTCCTTATGCAAGTTTGGCGATAAAAGCAATGTCGAAACATTTTCGGTGCTTGAAGAAGGCAATTACTGACCAGCTTCAGTACTCCAATAAGGCTCATTTTCACACAAGCAATCGGAAGGATGAATCTCCGAGATTTGGCAATAGTGAAAGAGGAGGTCCTTACGGCCATAGGTCAGGTTTTCTTGAGCAGCAACAACCTGTGTGGCGACCTCAAAGAGGACTCCCCGAGCGTGCTGTGACTGTTCTTAGAGCTTGGCTCTTTGAGCACTTTTTGCATCCCTATCCTACTGATACAGACAAGATAATGTTGGCTAAACAAACCGGTCTATCACGTAGCCAAGTGTCTAATTGGTTCATAAATGCAAGAGTAAGACTATGGAAACCAATGGTAGAAGAAATACACATGCTTGAAACAAGGCAAACTCCAAAAGATTCACAAAAGGAAGAAAGTTCTAGAAACAAATCAAATGAACATCACCATTTGCCTTCAGATACTTCTCTACTTTCCGATAATCCATCGACGTCGGCAGATAAGTTTCAAGACGTTGCTTACAAGCGTGCCGTGAACGAAATTCCGAACATACCAATTAGGAGTCAAGCACAACAACATCATCATCAACAACAAATGAATCTACCTTTTCAACAAGTTGGTGTTGGAATGAACATAGGTAGTGGAAGCAACAACAATAATAATAGTAATAGTAATGTTTCATTGACATTAGGACTTTATCAAAATCATGGAATTGGCTTAGCTGAACCATATCCATTAAGTGCTGCTCAAAGATTTGGTCTTGGACTTGAAACCAATAATGAAGGTTATGTTATGAGTGGTTTTGAATCACAAAATAGGCATTTTGGTAGAGATGTTATTGGAGGTCAAATGTTTCATGACTTTGTAGGATGA 1842 0.3643 MASDEGFEGYHVPQQSRRDKLRVVVAQNQSHEPLLPFYDSSSFITNYNQQQGLKQNSCSSSNSMKDLECSNLMMRFSREEGKRVMNNISSSSNNSCSVSHHPYFETLNHNNNNQGNHHNNNNNINNPFFFQAQNIQNLRNFDEQHHSSSTSTMMLNNHEPLSLSLSSNKSVSSNLPLELNLQRYGSMIYGGGGMIQGMVEGGSGGSVPFTGYASVLKDSRFLKPAQELLEEICDVGRRGVCSEKIVVLADSSLMMESPLERLSEEDPFGDDGRNKSRLLTMLDEVYKRYRQYYQQMQSVVTSFEYVSGLNNAAPYASLAIKAMSKHFRCLKKAITDQLQYSNKAHFHTSNRKDESPRFGNSERGGPYGHRSGFLEQQQPVWRPQRGLPERAVTVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRSQVSNWFINARVRLWKPMVEEIHMLETRQTPKDSQKEESSRNKSNEHHHLPSDTSLLSDNPSTSADKFQDVAYKRAVNEIPNIPIRSQAQQHHHQQQMNLPFQQVGVGMNIGSGSNNNNNSNSNVSLTLGLYQNHGIGLAEPYPLSAAQRFGLGLETNNEGYVMSGFESQNRHFGRDVIGGQMFHDFVG 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00533 613 FunFam BEL1-like homeodomain protein 9 384 446 - -
Trre7g00533 613 Gene3D - 384 446 - -
Trre7g00533 613 MobiDBLite consensus disorder prediction 449 488 - -
Trre7g00533 613 Pfam Associated with HOX 215 335 IPR006563 -
Trre7g00533 613 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 121 465 - -
Trre7g00533 613 SUPERFAMILY Homeodomain-like 383 448 IPR009057 -
Trre7g00533 613 ProSiteProfiles 'Homeobox' domain profile. 378 441 IPR001356 GO:0003677
Trre7g00533 613 Pfam Homeobox KN domain 398 437 IPR008422 GO:0003677|GO:0006355
Trre7g00533 613 SMART HOX_1 381 445 IPR001356 GO:0003677
Trre7g00533 613 SMART prehox3 210 336 IPR006563 -
Trre7g00533 613 CDD homeodomain 381 442 IPR001356 GO:0003677
Trre7g00533 613 MobiDBLite consensus disorder prediction 449 477 - -
Trre7g00533 613 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00533 Trre-Chr7 3328876 3333365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00533 149 613 Homeobox Transcription Factor Family AT5G02030 47.764 1.49e-115 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Trre7g00533 POX 8.4e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00533 - - cam:101498314 839.336