Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00457 ATGGGTTCTCAAAATCATGATCAACATGAGTATGAAGCATGTGCTTTAGAGAATGGAGGAAACATAAAAGGAATATTAAGCAAGGAAATTATGAAACATGGTAGAACAGCACATAACATGTCATCATCTTCACTACGCAAGAAATCTGACATCACTCTTGTCTCTAAACTTCACTGTGGAATCATTAGAAATCTTTTAGCTAATTTCCAAGAAGTTATTCTTGGAACAAAGCTTTCCATTCTGTTTCCAGCCATTCCCTTTGCCATTTTAGCTCAATGCTATGGTTTTGCAAGACCTTGGGTTTTTGCATTGAGCTTACTTGGTCTTATCCCTCTTGCTGAAAGACTCAGCTTCTTAACAGAGCAGATAGCTTATTACACAGGTCCCACAGTGGGAGGACTTTTGAATGCAACATGTGGGAATGCTACAGAACTAATCATTGCAATATTTGCACTTAGCAATAACAAAATTGCAGTAGTCAAGTATTCTCTCCTTGGTTCCATTCTCTCCAACCTTCTTCTTGTTCTTGGAACTTCTCTATTATGTGGTGGCATTGCAAACCTTAGAGCAGAACAAAAATATGATAGAAGACAATCAGATATGAACTTGCTTATGCTTCTTATGGCATTGTTGTGTCACTTACTGCCAATGTTGTTTCAATATGGTGGTGCTTCGGTGGCATTCGATGCAGACTCATCTCTGCAATTTTCAAGAGCTGCTAGCATTGTGATGGTGATTGCATATTTTGCATATCTTATCTTCCAACTATGGACTCACCGGCAATTATTTGAAGCACAAGATGAAGATGATGAAGAGAGTGAAAATGATTCAGAAGAAGCAGTTATAGGATTTTGCAGTGGTTTTGCTTGGCTGGTTATTATGACTGTGTTCATTGCTATTTTGTCTGAATATGTGGATGCATCAGATTCATGGGGTTTATCTGTCAGTTTCCTCAGCATAATCATGCTACCAATAGTTGGCAATGCAGCTGAACATGCAGGAGCTATCATATTTGCTTTCAAGAACAAACTGGACATCACTTTGGGTGTTGCTTTGGGTTCTGCAACTCAAATTGGAATGTTTGTGGTTCCTCTAAGTGTAATTGTTGCTTGGATTCTTGGTATTAAAATGGACCTCAATTTCAACCTCCTAGAAACAGGTTCTCTTGCTTTGGCAATAATAACCACAGGCTTCACATTACAGGATGGAACTTCTCACTACTTGAAAGGCCTTATTCTCTTGCTCTTGTACATTGTTATTGGGACATGTTTTTTTGTACAGAGAACACCCTCCGACCATGGTGATATTGCTAACATAATGCTTCATTCAGCAACTGATGCCAATTTTAGAGCTTAA 1356 0.3857 MGSQNHDQHEYEACALENGGNIKGILSKEIMKHGRTAHNMSSSSLRKKSDITLVSKLHCGIIRNLLANFQEVILGTKLSILFPAIPFAILAQCYGFARPWVFALSLLGLIPLAERLSFLTEQIAYYTGPTVGGLLNATCGNATELIIAIFALSNNKIAVVKYSLLGSILSNLLLVLGTSLLCGGIANLRAEQKYDRRQSDMNLLMLLMALLCHLLPMLFQYGGASVAFDADSSLQFSRAASIVMVIAYFAYLIFQLWTHRQLFEAQDEDDEESENDSEEAVIGFCSGFAWLVIMTVFIAILSEYVDASDSWGLSVSFLSIIMLPIVGNAAEHAGAIIFAFKNKLDITLGVALGSATQIGMFVVPLSVIVAWILGIKMDLNFNLLETGSLALAIITTGFTLQDGTSHYLKGLILLLLYIVIGTCFFVQRTPSDHGDIANIMLHSATDANFRA 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00457 451 FunFam Vacuolar cation/proton exchanger 129 273 - -
Trre7g00457 451 Gene3D - 129 284 IPR044880 -
Trre7g00457 451 NCBIfam calcium/proton exchanger 64 425 - -
Trre7g00457 451 Pfam Sodium/calcium exchanger protein 100 257 IPR004837 GO:0016020|GO:0055085
Trre7g00457 451 Pfam Sodium/calcium exchanger protein 281 420 IPR004837 GO:0016020|GO:0055085
Trre7g00457 451 FunFam Vacuolar cation/proton exchanger 275 426 - -
Trre7g00457 451 NCBIfam calcium/proton exchanger 84 425 IPR004798 GO:0006816|GO:0015369
Trre7g00457 451 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 429 IPR004713 GO:0006812|GO:0008324|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00457 Trre-Chr7 2863522 2868116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00457 17 433 Antiporters AT2G38170 67.447 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00457 K07300 - gmx:100782052 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g01623 13 13287509 13292006 Trre7g00457 7 2863522 2868116 PCT