Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00453 ATGGCTCCTAAGAATAATATGGGTCGAAAGAGCTCTATATATCGGGGTGTTAAAAACCGCAATAATACTTGTTATGAAGCATTTGTTTGGGGGAATAGGACCAAAAATGGTGGGAAAGGCAAGGCAGCACGGTTTAAATCTGAAGTTGAAGCAGCTAGAGCTCACGATTTAATTGCTATTAAGATGTGGGGTGATTCTACAATTACTAATTTTCCGGTGAGTTGCTACTCGAAGCAAATCTCAGAAATGAAAAATATGCACATGAAGCGGATTATTTTTAATATTAGAAGGACCTCAAGTAAGACTGGTTCTGAATATATCGGTGTCAAAAGACTCGAAGGCAATAAATGGGAAGCAACATTGGAAAAGAGTAAGGAGAGGCCAAGCTATTTCTTGGGAATATTTGACACTGAGGAAAAAGCTGCTAGAGAATATGATGAATTTGCAAAGAGATTTAATGGAGAGGATGCATACACCAATTTTGGTCCCAACAATGGTATTGCTGATAATTCAGAAGGCATGGAGAGTTCAAATGAACAAGCTTCAATATTGGAGGAACAAAAAGTAGTAAAAGATGATGTTGATATTTTTGAAATCAATGAAGCACAATATCATCATCATCTTTTGCATCAACATGATGACTTGAACTCATCAGCTCCAATTATACTTTACAATTTCAATGATCATTCAGTTTATGAAGTTGGAAAAGATGGAAACAAAAGCCATTATAATGCTACTTCATTCTAA 747 0.3588 MAPKNNMGRKSSIYRGVKNRNNTCYEAFVWGNRTKNGGKGKAARFKSEVEAARAHDLIAIKMWGDSTITNFPVSCYSKQISEMKNMHMKRIIFNIRRTSSKTGSEYIGVKRLEGNKWEATLEKSKERPSYFLGIFDTEEKAAREYDEFAKRFNGEDAYTNFGPNNGIADNSEGMESSNEQASILEEQKVVKDDVDIFEINEAQYHHHLLHQHDDLNSSAPIILYNFNDHSVYEVGKDGNKSHYNATSF 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00453 248 ProSiteProfiles AP2/ERF domain profile. 13 72 IPR001471 GO:0003700|GO:0006355
Trre7g00453 248 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 8 178 - -
Trre7g00453 248 SUPERFAMILY DNA-binding domain 12 74 IPR016177 GO:0003677
Trre7g00453 248 ProSiteProfiles AP2/ERF domain profile. 105 162 IPR001471 GO:0003700|GO:0006355
Trre7g00453 248 SMART rav1_2 13 78 IPR001471 GO:0003700|GO:0006355
Trre7g00453 248 SMART rav1_2 105 168 IPR001471 GO:0003700|GO:0006355
Trre7g00453 248 Pfam AP2 domain 105 154 IPR001471 GO:0003700|GO:0006355
Trre7g00453 248 Gene3D AP2/ERF domain 13 74 IPR036955 GO:0003700|GO:0006355
Trre7g00453 248 Gene3D AP2/ERF domain 105 163 IPR036955 GO:0003700|GO:0006355
Trre7g00453 248 SUPERFAMILY DNA-binding domain 104 163 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00453 Trre-Chr7 2836716 2846029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00453 7 161 AP2-EREBP Transcription Factor Family AT1G51190 40.964 2.16e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre7g00453 AP2 1.8e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00453 K09285 - psat:127091562 211.46