Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00445 ATGGAAATGGGGTCAAGTCCTCGCACTGTTGAAGAGATCTTCAAAGATTTCAGTTCTCGTAGAGATGGTATCGTTCGTGCTTTAACTCAAGATGTTGATGAGTTCTACGCACTCTGTGATCCAGATAAGGACAACTTGTGTCTCTATGGACATTCAAATGAATCATGGGAAGTAACTCTTCCCGCAGAGGAAGTTCCACCTGAGCTTCCAGAGCCAGCTCTCGGAATCAATTTTGCAAGGGATGGCATGAACCGTAGGGATTGGCTTTCCTTGGTAGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTACCTCGGAGCTCGTCTTAACCGCAATGAAAGGAAACGCTTATTTAGCTTGATCAATGACCTTCCAACTGTGTTTGAAGTTGTAACTGAGAGGAAGCCAATTAAGGACAAGCCAACTGTAGACAGTGGAAGCAAATCTCGGGGAAGCACCAAGAGATCAAGTGACGGGCAAGTTAAAAGCGTCCCAAAGTTGGCAGATGATCAAGGTTATGAGGAGGAAGAAGACGAGCATAGTGAAACCCTTTGCGGGACCTGCGGTGGAAACTACAACGCTGATGAATTTTGGATTGGCTGTGATATTTGCGAGAGGTGGTACCATGGGAAATGTGTGAAGATTACTCCCGCAAAAGCTGAGAGCATAAAGCAATACAAGTGCCCATCATGCAGCATGAAGAGGGGCAGGCCCTAA 723 0.4647 MEMGSSPRTVEEIFKDFSSRRDGIVRALTQDVDEFYALCDPDKDNLCLYGHSNESWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTERKPIKDKPTVDSGSKSRGSTKRSSDGQVKSVPKLADDQGYEEEEDEHSETLCGTCGGNYNADEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMKRGRP 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00445 240 MobiDBLite consensus disorder prediction 148 162 - -
Trre7g00445 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Trre7g00445 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 234 IPR013083 -
Trre7g00445 240 PANTHER CPG BINDING PROTEIN 6 239 IPR045104 GO:0006355|GO:0042393
Trre7g00445 240 FunFam PHD finger alfin-like protein 179 235 - -
Trre7g00445 240 SMART PHD_3 186 234 IPR001965 -
Trre7g00445 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Trre7g00445 240 CDD PHD_AL_plant 186 236 IPR044104 -
Trre7g00445 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
Trre7g00445 240 MobiDBLite consensus disorder prediction 140 180 - -
Trre7g00445 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Trre7g00445 240 Pfam PHD-finger 187 235 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00445 Trre-Chr7 2775507 2778241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00445 5 239 Alfin-like Transcription Factor Family AT5G05610 77.966 1.24e-120 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Trre7g00445 Alfin 5.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00445 K26274 - pvy:116115131 452.981