Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00440 ATGGAGGGTCATCAATTTCATCACAAAAACCAAAGACAACAACAAAATCTTCATCTTCATCAAAATATTAACGTTGTTGATGTTGTTGATAGATTTCCGCAATGGAGCATCCAAGAGACGAAAGAGTTTCTTATGCTCCGAGCGGAACTAGATCAAACTTTTATGGAGACTAAAAGGAACAAACAGTTGTGGGATGTTATTTCCATTCATATGAAAGAAAAGGGTTACCATAGAAGTGCAGAACAGTGCAAGTGCAAATGGAAAAATCTTGTTACTCGCTATAAGGGATGTGAAACAATGGAGACAGAAGCAATGAGACATCAATTTCCATTTTACAATGAACTTCAAGAAATTTTCACATCAAGGATGCAAAGGATGCTATGGGCGGAAGCCGAAGATGGATCGAAGAAAAAGGCGACACAGCATTCAACGGACGACGAAGATGAAGAAGGTAATGAAGAAAGTGAAGCAATATCTCAAAAGGGTAGAAGTAGAAAGAAGAAAAAAGCTAAGATAGTTAGCGAAAGCGGCGGTAGCAGCAGCAATTTCTTTAACAATTTGAAAGAAATTTTGGATGAATTCATGAGGCATCAACTACAAATTGAAGCACAATGGATGGAAGCATTTGAAGCTAGAGAGAATGAAAGGAAATTAAGGGAGATGGAATGGAGACAACAAATGGAAGTGTTGGAGAATGAGAGGATATTGATGGAACAAAGATGGAGAGAAAGGGAAGAACAAAGAAGGATTAGAGATGAAGCTAGGGCTGAGAAGAGGGATGCTTTAATCACAGCTTTGTTAAACAGGTTAGAAAGACAGTAG 822 0.382 MEGHQFHHKNQRQQQNLHLHQNINVVDVVDRFPQWSIQETKEFLMLRAELDQTFMETKRNKQLWDVISIHMKEKGYHRSAEQCKCKWKNLVTRYKGCETMETEAMRHQFPFYNELQEIFTSRMQRMLWAEAEDGSKKKATQHSTDDEDEEGNEESEAISQKGRSRKKKKAKIVSESGGSSSNFFNNLKEILDEFMRHQLQIEAQWMEAFEARENERKLREMEWRQQMEVLENERILMEQRWREREEQRRIRDEARAEKRDALITALLNRLERQ 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00440 273 Pfam Myb/SANT-like DNA-binding domain 34 118 IPR044822 -
Trre7g00440 273 ProSiteProfiles Myb-like domain profile. 35 91 IPR001005 -
Trre7g00440 273 Coils Coil 220 240 - -
Trre7g00440 273 Gene3D - 35 96 - -
Trre7g00440 273 SMART sant 31 93 IPR001005 -
Trre7g00440 273 MobiDBLite consensus disorder prediction 131 145 - -
Trre7g00440 273 MobiDBLite consensus disorder prediction 131 177 - -
Trre7g00440 273 FunFam Zinc finger and SCAN domain-containing 20 35 96 - -
Trre7g00440 273 PANTHER FI21293P1 13 271 - -
Trre7g00440 273 CDD GT1 33 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00440 Trre-Chr7 2757326 2758685 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00440 18 272 Trihelix Transcription Factor Family AT2G38250 50.549 3.02e-69 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Trre7g00440 Myb_DNA-bind_4 6.8e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00440 - - gmx:100794230 360.918