Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00406 ATGTCAAGGGAATTTAATTTCATTAAGGATCTCAACAAGGAGAGAGACATCTGGAAAATAGCAGTCAGAGTTATAGACTCCTGGACTGTTACAGGGACTAATGGCTTTCAACATCTTGAGATGGTTATTGTTGATGGGAAGGGTGATCGTGTTCTTGCTGTTACCCGGTATAAGGAATATGAACACTGGAAGGAGTTTATTGAGGAACACAAGGTTTATACCTTGCATAACTGTCAAGTTTATGACAATGATCTTGGTTTCAAACCAACTGAGGGCCCTTTCAAAGTTGTTTTTGGGTCAGGTACAAAGTTCACCAAATCACCTGAAATCACTAACATTCCTCTTCATGAGTTTTGCTTCAAAAATTACAAAGAAGTTCAAGCTGGAAAGTTCAAAAATAACTTATTATATGAGATCATTGGAGTTATTCATGAAGTTGTCAAAACTCAAAGTGTTGCTTCTGGGAAGAAACCATGTACTAATTTAATCTTAGCTAATGAATGTGGCGACATGGTTGATGTCACTCTGTGGGAAGCATTTTCTATTCAACTGATGAACTATATCACTAACCGCAAAGACAAAGGTCCAATTGTGTTAATTCTAACACATGCTCAGTGCAAACTAGGAGACAATGGTAGACCAAACTTCTGTAACAATTGGACCGGATCAAAGCTTTTAATCAATTTGGAACATCCAGCTGTAGAAAAGTTTAAGTCGTCATTCAACGACATTTCTTCAACGCAAGCTGCTACTCAAGACTTTAGTCAAATATCTTCATCTTCTCAAGTTTCTAACAATGATGTGTTTTCAAATCTAACTCAGTTCAAGACAATTGCTCAAATGAAACTCTTTCAGAAGGACTCCCACTGCATCACTATTGGAACTACAAAAAAGTTTAATCCTAACCAGTTTGGTTGGTACTATGAAAGTTGTACCAAATGTACTAAATCATCAAGATCTTTGGGTGAAAATTATACATGCTCATGCGGTGAGGAAGTCAAAGTTCCAATTGCTAGGTTCAAAGTTGTTGTTCAAGTTGAATATCAAGGTAGTAAGGCAGATTTTATTTTCTGGGACAATGAATGTCAATCCATTATTGGTGACACTGCTGAAGATATCCGTCAAGAGATGAAAAAGGTTGGTGAAGATGATCCTAAAATATATCCAACTCATCTTGACAAACTTCTTAATTTAGAATGTGCATTTAAAGTTAAGTACCAGCCATACTATCGCCAAGCTTCAATCAATAAGCTGTCATCTGATTCCACTATCATCAATAATATTAAGATTCACATCACTCCATCTCAGCCTACTCCAACCATTTCAAATTCTGCTCCAAACTCTGCTGAACCTTCCAAGCTTACAACCACTATGGACAATGAAAACATACAATGCTCTGACTCTACTCCAATTAGTTCAAAATCAACTGCAAAAATGTTTGAACCTTCACAGCCTACAACACAATGCTCTGACTCTTTTGTTGTTCCAACGGTCTCCCTTTCTGCTTCAAATGAAGCTGACTTTGAAATTATCTCCAACATTACACCTGCTAAGCGTGTTTCAACTGACAATGAAATACATCCAGACACTGCATCTCCTCAAATCAATGAAGGTCAACTTTCATCTACAAGGTTACGTACTAAGGCTGCAAAGGGAGGAAAGCATGTCAAACTTGAATGA 1680 0.372 MSREFNFIKDLNKERDIWKIAVRVIDSWTVTGTNGFQHLEMVIVDGKGDRVLAVTRYKEYEHWKEFIEEHKVYTLHNCQVYDNDLGFKPTEGPFKVVFGSGTKFTKSPEITNIPLHEFCFKNYKEVQAGKFKNNLLYEIIGVIHEVVKTQSVASGKKPCTNLILANECGDMVDVTLWEAFSIQLMNYITNRKDKGPIVLILTHAQCKLGDNGRPNFCNNWTGSKLLINLEHPAVEKFKSSFNDISSTQAATQDFSQISSSSQVSNNDVFSNLTQFKTIAQMKLFQKDSHCITIGTTKKFNPNQFGWYYESCTKCTKSSRSLGENYTCSCGEEVKVPIARFKVVVQVEYQGSKADFIFWDNECQSIIGDTAEDIRQEMKKVGEDDPKIYPTHLDKLLNLECAFKVKYQPYYRQASINKLSSDSTIINNIKIHITPSQPTPTISNSAPNSAEPSKLTTTMDNENIQCSDSTPISSKSTAKMFEPSQPTTQCSDSFVVPTVSLSASNEADFEIISNITPAKRVSTDNEIHPDTASPQINEGQLSSTRLRTKAAKGGKHVKLE 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00406 559 SUPERFAMILY Nucleic acid-binding proteins 123 242 IPR012340 -
Trre7g00406 559 MobiDBLite consensus disorder prediction 435 454 - -
Trre7g00406 559 Pfam Domain of unknown function DUF223 40 118 IPR003871 -
Trre7g00406 559 PANTHER OS03G0429900 PROTEIN 5 546 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g00406 559 MobiDBLite consensus disorder prediction 521 546 - -
Trre7g00406 559 CDD RPA1_DBD_A_like 19 104 - -
Trre7g00406 559 Gene3D - 111 254 IPR012340 -
Trre7g00406 559 MobiDBLite consensus disorder prediction 521 559 - -
Trre7g00406 559 SUPERFAMILY Nucleic acid-binding proteins 275 407 IPR012340 -
Trre7g00406 559 MobiDBLite consensus disorder prediction 460 488 - -
Trre7g00406 559 Gene3D - 3 106 IPR012340 -
Trre7g00406 559 SUPERFAMILY Nucleic acid-binding proteins 4 113 IPR012340 -
Trre7g00406 559 Gene3D - 255 430 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00406 Trre-Chr7 2594548 2597227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00406 1 382 Core DNA Replication Machinery Family AT5G08020 21.642 4.66e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00406 - - tpra:123885385 722.235