Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00405 ATGGAAGCTCATTCACGTGCACCAAGTTTGAAGGAAAGTTTCCAAATGTCAAGGGAATTTAATTTCATTAAGGATCTCAACAAGGAGAGAGACATCTGGAAAATAGCAGTCAGAGTTATAGACTCCTGGACTGTTACAGGGACTAATGGCTTTCAACATCTTGAGATGGTTATTGTTGATGGGAAGGGTGATCGTGTTCTTGCTGTTACCCGGTATAAGGAATATGAACACTGGAAGGAGTTTATTGAGGAACACAAGGTTTATACCTTGCATAACTGTCAAGTTTATGACAATGATCTTGGTTTCAAACCAACTGAGGGCCCTTTCAAAGTTGTTTTTGGGTCAGGTACAAAGTTCACCAAATCACCTGAAATCACTAACATTCCTCTTCATGAGTTTTGCTTCAAAAATTACAAAGAAGTTCAAGCTGGAAAGTTCAAAAATAACTTATTATATGAGATCATTGGAGTTATTCATGAAGTTGTCAAAACTCAAAGTGTTGCTTCTGGGAAGAAACCATGTACTAATTTAATCTTAGCTAATGAATGTGGCGACATGGTTGATGTCACTCTGTGGGAAGCATTTTCTATTCAACTGATGAACTATATCACTAACCGCAAAGACAAAGGTCCAATTGTGTTAATTCTAACACATGCTCAGTGCAAACTAGGAGACAATGGTAGACCAAACTTCTGTAACAATTGGACCGGATCAAAGCTTTTAATCAATTTGGAACATCCAGCTGTAGAAAAGTTTAAGTCGTCATTCAACGACATTTCTTCAACGCAAGCTGCTACTCAAGACTTTAGTCAAATATCTTCATCTTCTCAAGTTTCTAACAATGATGTGTTTTCAAATCTAACTCAGTTCAAGACAATTGCTCAAATGAAACTCTTTCAGAAGGACTCCCACTGCATCACTATTGGAACTACAAAAAAGTTTAATCCTAACCAGTTTGGTTGGTACTATGAAAGTTGTACCAAATGTACTAAATCATCAAGATCTTTGGGTGAAAATTATACATGCTCATGCGGTGAGGAAGTCAAAGTTCCAATTGCTAGGTTCAAAGTTGTTGTTCAAGTTGAATATCAAGGTAGTAAGGCAGATTTTATTTTCTGGGACAATGAATGTCAATCCATTATTGGTGACACTGCTGAAGATATCCGTCAAGAGATGAAAAAGGTTGGTGAAGATGATCCTAAAATATATCCAACTCATCTTGACAAACTTCTTAATTTAGAATGTGCATTTAAAGTTAAGTACCAGCCATACTATCGCCAAGCTTCAATCAATAAGCTGTCATCTGATTCCACTATCATCAATAATATTAAGATTCACATCACTCCATCTCAGCCTACTCCAACCATTTCAAATTCTGCTCCAAACTCTGCTGAACCTTCCAAGCTTACAACCACTATGGACAATGAAAACATACAATGCTCTGACTCTACTCCAATTAGTTCAAAATCAACTGCAAAAATGTTTGAACCTTCACAGCCTACAACACAATGCTCTGACTCTTTTGTTGTTCCAACGGTCTCCCTTTCTGCTTCAAATGAAGCTGACTTTGAAATTATCTCCAACATTACACCTGCTAAGCGTGTTTCAACTGACAATGAAATACATCCAGACACTGCATCTCCTCAAATCAATGAAGGTCAACTTTCATCTACAAGGTTACGTACTAAGGCTGCAAAGGGAGGAAAGCATGTCAAACTTGAATGA 1725 0.3733 MEAHSRAPSLKESFQMSREFNFIKDLNKERDIWKIAVRVIDSWTVTGTNGFQHLEMVIVDGKGDRVLAVTRYKEYEHWKEFIEEHKVYTLHNCQVYDNDLGFKPTEGPFKVVFGSGTKFTKSPEITNIPLHEFCFKNYKEVQAGKFKNNLLYEIIGVIHEVVKTQSVASGKKPCTNLILANECGDMVDVTLWEAFSIQLMNYITNRKDKGPIVLILTHAQCKLGDNGRPNFCNNWTGSKLLINLEHPAVEKFKSSFNDISSTQAATQDFSQISSSSQVSNNDVFSNLTQFKTIAQMKLFQKDSHCITIGTTKKFNPNQFGWYYESCTKCTKSSRSLGENYTCSCGEEVKVPIARFKVVVQVEYQGSKADFIFWDNECQSIIGDTAEDIRQEMKKVGEDDPKIYPTHLDKLLNLECAFKVKYQPYYRQASINKLSSDSTIINNIKIHITPSQPTPTISNSAPNSAEPSKLTTTMDNENIQCSDSTPISSKSTAKMFEPSQPTTQCSDSFVVPTVSLSASNEADFEIISNITPAKRVSTDNEIHPDTASPQINEGQLSSTRLRTKAAKGGKHVKLE 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00405 574 CDD RPA1_DBD_A_like 34 119 - -
Trre7g00405 574 Gene3D - 270 445 IPR012340 -
Trre7g00405 574 Pfam Domain of unknown function DUF223 55 133 IPR003871 -
Trre7g00405 574 SUPERFAMILY Nucleic acid-binding proteins 138 257 IPR012340 -
Trre7g00405 574 SUPERFAMILY Nucleic acid-binding proteins 290 422 IPR012340 -
Trre7g00405 574 Gene3D - 126 269 IPR012340 -
Trre7g00405 574 MobiDBLite consensus disorder prediction 475 503 - -
Trre7g00405 574 MobiDBLite consensus disorder prediction 536 561 - -
Trre7g00405 574 SUPERFAMILY Nucleic acid-binding proteins 19 128 IPR012340 -
Trre7g00405 574 Gene3D - 18 121 IPR012340 -
Trre7g00405 574 MobiDBLite consensus disorder prediction 536 574 - -
Trre7g00405 574 PANTHER OS03G0429900 PROTEIN 19 561 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g00405 574 MobiDBLite consensus disorder prediction 450 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00405 Trre-Chr7 2593873 2597227 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00405 7 397 Core DNA Replication Machinery Family AT5G08020 21.655 3.07e-09 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00405 - - tpra:123885385 722.235