Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00404 ATGGAAGCTCATTCACGTGCACCAAGTTTGAAGGAAAGTAAGTCCACTTTAAGTCAGAAAATCCTTCTCTCTACAGGGTTTGGTAGCTTCTATCCTGGATACATCATATCACCTTTTGAGCCCAAAACACACTCTTTCCAACAAGCTATCACACTGCTTCATTTTCCTCATTTCTTCTTTCTTCTACCTTCTTCACAACTCCAAACATTGTGTCAAACACCAGGTTTCCAAATGTCAAGGGAATTTAATTTCATTAAGGATCTCAACAAGGAGAGAGACATCTGGAAAATAGCAGTCAGAGTTATAGACTCCTGGACTGTTACAGGGACTAATGGCTTTCAACATCTTGAGATGGTTATTGTTGATGGGAAGGGTGATCGTGTTCTTGCTGTTACCCGGTATAAGGAATATGAACACTGGAAGGAGTTTATTGAGGAACACAAGGTTTATACCTTGCATAACTGTCAAGTTTATGACAATGATCTTGGTTTCAAACCAACTGAGGGCCCTTTCAAAGTTGTTTTTGGGTCAGGTACAAAGTTCACCAAATCACCTGAAATCACTAACATTCCTCTTCATGAGTTTTGCTTCAAAAATTACAAAGAAGTTCAAGCTGGAAAGTTCAAAAATAACTTATTATATGAGATCATTGGAGTTATTCATGAAGTTGTCAAAACTCAAAGTGTTGCTTCTGGGAAGAAACCATGTACTAATTTAATCTTAGCTAATGAATGTGGCGACATGGTTGATGTCACTCTGTGGGAAGCATTTTCTATTCAACTGATGAACTATATCACTAACCGCAAAGACAAAGGTCCAATTGTGTTAATTCTAACACATGCTCAGTGCAAACTAGGAGACAATGGTAGACCAAACTTCTGTAACAATTGGACCGGATCAAAGCTTTTAATCAATTTGGAACATCCAGCTGTAGAAAAGTTTAAGTCGTCATTCAACGACATTTCTTCAACGCAAGCTGCTACTCAAGACTTTAGTCAAATATCTTCATCTTCTCAAGTTTCTAACAATGATGTGTTTTCAAATCTAACTCAGTTCAAGACAATTGCTCAAATGAAACTCTTTCAGAAGGACTCCCACTGCATCACTATTGGAACTACAAAAAAGTTTAATCCTAACCAGTTTGGTTGGTACTATGAAAGTTGTACCAAATGTACTAAATCATCAAGATCTTTGGGTGAAAATTATACATGCTCATGCGGTGAGGAAGTCAAAGTTCCAATTGCTAGGTTCAAAGTTGTTGTTCAAGTTGAATATCAAGGTAGTAAGGCAGATTTTATTTTCTGGGACAATGAATGTCAATCCATTATTGGTGACACTGCTGAAGATATCCGTCAAGAGATGAAAAAGGTTGGTGAAGATGATCCTAAAATATATCCAACTCATCTTGACAAACTTCTTAATTTAGAATGTGCATTTAAAGTTAAGTACCAGCCATACTATCGCCAAGCTTCAATCAATAAGCTGTCATCTGATTCCACTATCATCAATAATATTAAGATTCACATCACTCCATCTCAGCCTACTCCAACCATTTCAAATTCTGCTCCAAACTCTGCTGAACCTTCCAAGCTTACAACCACTATGGACAATGAAAACATACAATGCTCTGACTCTACTCCAATTAGTTCAAAATCAACTGCAAAAATGTTTGAACCTTCACAGCCTACAACACAATGCTCTGACTCTTTTGTTGTTCCAACGGTCTCCCTTTCTGCTTCAAATGAAGCTGACTTTGAAATTATCTCCAACATTACACCTGCTAAGCGTGTTTCAACTGACAATGAAATACATCCAGACACTGCATCTCCTCAAATCAATGAAGGTCAACTTTCATCTACAAGGTTACGTACTAAGGCTGCAAAGGGAGGAAAGCATGTCAAACTTGAATGA 1911 0.3757 MEAHSRAPSLKESKSTLSQKILLSTGFGSFYPGYIISPFEPKTHSFQQAITLLHFPHFFFLLPSSQLQTLCQTPGFQMSREFNFIKDLNKERDIWKIAVRVIDSWTVTGTNGFQHLEMVIVDGKGDRVLAVTRYKEYEHWKEFIEEHKVYTLHNCQVYDNDLGFKPTEGPFKVVFGSGTKFTKSPEITNIPLHEFCFKNYKEVQAGKFKNNLLYEIIGVIHEVVKTQSVASGKKPCTNLILANECGDMVDVTLWEAFSIQLMNYITNRKDKGPIVLILTHAQCKLGDNGRPNFCNNWTGSKLLINLEHPAVEKFKSSFNDISSTQAATQDFSQISSSSQVSNNDVFSNLTQFKTIAQMKLFQKDSHCITIGTTKKFNPNQFGWYYESCTKCTKSSRSLGENYTCSCGEEVKVPIARFKVVVQVEYQGSKADFIFWDNECQSIIGDTAEDIRQEMKKVGEDDPKIYPTHLDKLLNLECAFKVKYQPYYRQASINKLSSDSTIINNIKIHITPSQPTPTISNSAPNSAEPSKLTTTMDNENIQCSDSTPISSKSTAKMFEPSQPTTQCSDSFVVPTVSLSASNEADFEIISNITPAKRVSTDNEIHPDTASPQINEGQLSSTRLRTKAAKGGKHVKLE 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00404 636 MobiDBLite consensus disorder prediction 512 531 - -
Trre7g00404 636 PANTHER OS03G0429900 PROTEIN 61 623 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre7g00404 636 Pfam Domain of unknown function DUF223 117 195 IPR003871 -
Trre7g00404 636 MobiDBLite consensus disorder prediction 598 623 - -
Trre7g00404 636 MobiDBLite consensus disorder prediction 598 636 - -
Trre7g00404 636 Gene3D - 332 507 IPR012340 -
Trre7g00404 636 Gene3D - 188 331 IPR012340 -
Trre7g00404 636 SUPERFAMILY Nucleic acid-binding proteins 81 190 IPR012340 -
Trre7g00404 636 MobiDBLite consensus disorder prediction 537 565 - -
Trre7g00404 636 CDD RPA1_DBD_A_like 96 181 - -
Trre7g00404 636 SUPERFAMILY Nucleic acid-binding proteins 200 319 IPR012340 -
Trre7g00404 636 SUPERFAMILY Nucleic acid-binding proteins 352 484 IPR012340 -
Trre7g00404 636 Gene3D - 80 183 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00404 Trre-Chr7 2593873 2597227 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00404 52 459 Core DNA Replication Machinery Family AT5G08020 21.759 4.72e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00404 - - tpra:123885385 722.235