Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00403 ATGTTTGGGTTTCTCAGGCCAGTTGCCCATGTCCCATGCGGGAACTACCGGACAACACTCATGTATCCGTATGGAGCTCCTTCAGTCAAATATGTTGTTTATCACTATATTACTAATATCAATGTGATGAGAAGTGGAATCCCCAATTTCTGTGCAGTTGCATTAGCTCTTGGTGATTTAGGATACAAAGCAGTTGGCATTAGATTGGATTTTGGTGACCTTGCCTATTTGTCTTGTCATGCCAGGAAGTTCTTTTGTTCCATTGAGAATGAATTTGGGGTGCCTGGATTTGGGAAGTTAATAATCACTGCTAGTAATGACCTCAATGAGGAAACATTAGATGCTTTAAACAAACAGGTTTGTGGTCTTGAGTTTAGTATTGCACCCAATCCCACCATTAAAGGTCAGAATTTTATTCCCTCTAAGGGAGGCCATTGGGATATAATGAGTTTAGAACATCAATCATGTTCTGATATTCTAATTAAATTTATTGGAGGGAAGATAGTAGTCAAAGAAGGAAACAATGATTGTGGATCTTGTCATAGTCAAAGGAATAATTTGGATCTTGCCAAGCACTTGATCATCCCTTCCGTTAACTCATTCTAA 606 0.3878 MFGFLRPVAHVPCGNYRTTLMYPYGAPSVKYVVYHYITNINVMRSGIPNFCAVALALGDLGYKAVGIRLDFGDLAYLSCHARKFFCSIENEFGVPGFGKLIITASNDLNEETLDALNKQVCGLEFSIAPNPTIKGQNFIPSKGGHWDIMSLEHQSCSDILIKFIGGKIVVKEGNNDCGSCHSQRNNLDLAKHLIIPSVNSF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00403 201 Gene3D Aldolase class I 26 124 IPR013785 -
Trre7g00403 201 Pfam LSD1 zinc finger 13 30 IPR005735 -
Trre7g00403 201 SUPERFAMILY Nicotinate/Quinolinate PRTase C-terminal domain-like 35 119 IPR036068 GO:0009435
Trre7g00403 201 NCBIfam zinc finger domain, LSD1 subclass 10 30 IPR005735 -
Trre7g00403 201 PANTHER NICOTINATE PHOSPHORIBOSYLTRANSFERASE 41 120 IPR007229 GO:0004516
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00403 Trre-Chr7 2585591 2589139 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre7g00403 zf-LSD1 2.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00403 K00763 - mof:131144368 147.902