Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00400 ATGTCTTCCCCGACACGTTCCTTTTCTGATGTTTTAGATCCGGACAATTTATTATGGACCAGTGAGAAGTTGGATGATGACGTGTTCACTCGTCTAGTCATCAATTTGGCCGAACGGGAAAATTTAGTATGGCGTGGTCGGGATTTGGATGATGATGTGTTCATTCGTGAACTCCAGGAAATTTTGCAAAGATCCCTTTCCCGATATGAAGCCAGTTCTGCAGAACAAATATTAGACATTTCTCCGTTTACTTCTTCCGATCAATTGGATCCTGAAATTTTGGAAAAATCCTTTAACCAATATGCAGCCAGTTCTGGCAAACAAAAATTGCACAGTTCTCGGATTACTTCTTCCGATGAATTTGATCCTGAAATGGACATGTGTCCATTCCCCTCGGATGAGCAGCTTGATACTCCAGGCAGTAGAAGAAAGTACGACGTGTTCTTGAGTTTCCGAGGAGAAGACACTCGCGCATCTTTCACTTCACATCTCTATTCCTCTCTTCAAAATTCTGGAATTATCGCTTTCAAGGACGATCATTCTCTTCAAAGAGGAAACCGCATCTCTAAATCATTACTGGAAGCTATTCAAGAGTCTCGAATTTCTGTTATTGTTTTCTCTAAAAATTACGCAAATTCGCATTGGTGTCTTCAAGAGTTGATGCAAATTATGGAGTGTCATAGAACTATAGGTCAGTTGGTGCTTCCTGTTTTCTACGATGTAGATCCATCCCAAGTTCGTCATCAAACTGGTGAGTTTGGTAAAGCTTTTCAAAATGCATTGAACAAACTTTATAAAGTGGATGAATTTATGGTGCCAAAGTGGAGAGATTCACTTCGTGATGCTGCTGGTCTTGCAGGATTTGTTGTCCTAAATTCCAGGAATGAAAGTGAGGTTATCAAGGATATTGTTGAAAATGTCACACGTTTTCTTGACAAGACAGACTTGTTCATTGCTGATAATCCAGTTGGACTCGAATCTCGTGTGCAAGATATTATTCAACTTCTAGACACTCAACAATCAAATAATGTTCTACTATTAGGGATGTGGGGGATGGGTGGAATTGGCAAAACCACCATTGCAAAAGCTATTTATAATAAAATTGGACGCAATTTTGAAGGTAGGAGCTTTCTTGCAAATATTAGGGAGGTTTGGGAAAAAGATTGTGGGCAAGAGTATTTACAAGGACAACTTATGTATGATATTTTCAAAGAAACCACAACCAAGATACAAAACATTGAATCGGGAATATCTATATTAAAGGAAAGACTATGTCATAAAAGTGTTCTTCTTGTACTTGACGACGTGAATAAATTGGACCAACTAAATTCTTTGTGTGGAAGTTGTAAATGGTTTGCTCCTGGGAGTAGAATAATCATTACAACCAGGGATAAGCATATACTTAGAGGGAATAGAGTTGACAAAATATACACAATGAAAGAAATGAATGACACTGAATCTCTTGAGCTTTTTAGTTGGCATGCATTCAAGCAAACGATCCCCACAAAAGATTTTTCTGAAATTTCAAAAAATGTAGTTAAGTATTCAGGGGGATTGCCGCTAGCTCTTGAAGTCCTTGGGTCCTATTTGTTTGATAGGGAGGTATCAGAATGGATTTGTGTATTGGAGAAACTCAAAAGAATTCCCAATGATCAAGTACATAAGAAGTTAAAAATAAGCTACGATGGTTTAAGTGATGATAAAGAGAAATCTATATTCCTCGACATAGCTTGTTTCTTCATTGGGATTGACCGAAATGATGTTATTCTTATATTAAATGGCTGTGGACTTTTCGCCGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGCCTTGTAACAGTGGATGATAAGAACAAACTTGGCATGCATGATTTGCTGCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAAATGAGCCTGAAGAACGCAGTAGGTTGTGGTTTCATGAGGATGTGCTTGATGTATTATCAGAACATACTGGAACAAAAGCTGTTGAGGGACTGACTTTGAAGCTTCCAGGTCTTAGTGCACAATGTTTTAGTACCAAAGCATTTGAGAATATGAAGAAACTTAGATTGCTTCAACTTTCTGGTGCACAACTTGATGGAGATTTTAAATATCTTTCAAGAAATTTGAGATGGCTGTGCTGGAATGGATTTCCTTTAGAATGCATACCTGCAAACTTCTTTCAAAGACATTTGGTGTCCATTGAGTTAGAAAACAGCAATGTCAAACTTGTGTGGAATGAGATGCAGAGGATGGAGCAGCTGAAAATTCTCAATCTTAGTCATTCTCATTATCTGACGCAGACCCCTGACTTTTCATACTTGCCTAATCTTGAAAAGCTAATACTCAAAGATTGTCCAAGGCTGTCTCAGGTATCCGATAGCATTGGACATCTCAATAAAATTCTTCTGATAAATTTGAAAAACTGTATTAACCTTTGTAACCTTCCAAGAAACATCTATACATTGAAATCTCTGAAAACTCTCATTCTATCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACTCTGATTGCAGATAACACTGCTATAACAGAAGTTCCCTTTTCACTAGTAAGGTCAAAAAGCATTGGATATATTTCTTTGTGTGGATATGAAGGATTCTCCCATGATGTGTTTCCTTCTATCATTTGGTCTTGGATGTCACCAACAAATAATCTCCCATCCACTATGTCATCCCTTGTTTCTTTGAATGCATCAAATAGTATTTCCGACAATCTATCATCTATTTCCAATTTGCTTCCAAAGCTTCAAAGCCTTCGGTTGGAGTGTGGATCAAAACTTCAACTAACAAGAGTTTTGAAAGCTTTAAATGCAACTAGTTCTAAGGAAGTGGAATCAACTGCAACTACATCAGAAGTATTGGATGTGAAGGTTTCTTCATTAATTGAATGTGACGGTCAAGTGAACGTTTCAACAACAAAAAATTCTTTGAAATCTCTTTTAATCCAAATTGGAATGAATTGCCCAATCGCCAATATTCTGAAAAAGAGCATCTTACAGAATTTGACTATCGATGGGTGTGGATTTTTGCTTCCTGGTGATAAGTATCCAGATTGGTTAACTTTCGATTCTGAAGGTTCTTCTGTAATTTTTGAAGTCCCCCGAGTGGAAGAGCGTAATTTGAAGACAATGATATGCGTTGTCTATTCTTCAAGCCCTAATGACATAGCATCTGCTGACCTTAAAAATGTGTTGGTGATAAATCACACAAAAACCACCATTCAGCTCTATAAGAGAGAAGCACTTTCCTCCTTTGAAAATGAGGAGTGGCAGAGTGTGGTATCAAATATGGAACCTGGTGACAAAGTCGAGATTGTTCTTGTTTTTGAGAACAGTTTCATTGTGATGAAGACAGCAATTTATCTCGTATATGATGAACTAATTGACGAAAATATTGTTAGTAGTTGTAATTCAGTTTGTAGAGAAATAACACAAGTTAGTTATAACTGTAATATAGTTGAGTTAGTTTTGTTTCTTGTAAAAGCTTGTTGTAACCGATGTGGGATGCAGTGA 3576 0.3725 MSSPTRSFSDVLDPDNLLWTSEKLDDDVFTRLVINLAERENLVWRGRDLDDDVFIRELQEILQRSLSRYEASSAEQILDISPFTSSDQLDPEILEKSFNQYAASSGKQKLHSSRITSSDEFDPEMDMCPFPSDEQLDTPGSRRKYDVFLSFRGEDTRASFTSHLYSSLQNSGIIAFKDDHSLQRGNRISKSLLEAIQESRISVIVFSKNYANSHWCLQELMQIMECHRTIGQLVLPVFYDVDPSQVRHQTGEFGKAFQNALNKLYKVDEFMVPKWRDSLRDAAGLAGFVVLNSRNESEVIKDIVENVTRFLDKTDLFIADNPVGLESRVQDIIQLLDTQQSNNVLLLGMWGMGGIGKTTIAKAIYNKIGRNFEGRSFLANIREVWEKDCGQEYLQGQLMYDIFKETTTKIQNIESGISILKERLCHKSVLLVLDDVNKLDQLNSLCGSCKWFAPGSRIIITTRDKHILRGNRVDKIYTMKEMNDTESLELFSWHAFKQTIPTKDFSEISKNVVKYSGGLPLALEVLGSYLFDREVSEWICVLEKLKRIPNDQVHKKLKISYDGLSDDKEKSIFLDIACFFIGIDRNDVILILNGCGLFAEIGISVLVERSLVTVDDKNKLGMHDLLRDMGREIIREKSPNEPEERSRLWFHEDVLDVLSEHTGTKAVEGLTLKLPGLSAQCFSTKAFENMKKLRLLQLSGAQLDGDFKYLSRNLRWLCWNGFPLECIPANFFQRHLVSIELENSNVKLVWNEMQRMEQLKILNLSHSHYLTQTPDFSYLPNLEKLILKDCPRLSQVSDSIGHLNKILLINLKNCINLCNLPRNIYTLKSLKTLILSGCLMIDKLEEDIEQMESLTTLIADNTAITEVPFSLVRSKSIGYISLCGYEGFSHDVFPSIIWSWMSPTNNLPSTMSSLVSLNASNSISDNLSSISNLLPKLQSLRLECGSKLQLTRVLKALNATSSKEVESTATTSEVLDVKVSSLIECDGQVNVSTTKNSLKSLLIQIGMNCPIANILKKSILQNLTIDGCGFLLPGDKYPDWLTFDSEGSSVIFEVPRVEERNLKTMICVVYSSSPNDIASADLKNVLVINHTKTTIQLYKREALSSFENEEWQSVVSNMEPGDKVEIVLVFENSFIVMKTAIYLVYDELIDENIVSSCNSVCREITQVSYNCNIVELVLFLVKACCNRCGMQ 1191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00400 1191 SMART AAA_5 343 483 IPR003593 GO:0016887
Trre7g00400 1191 Gene3D Ribonuclease Inhibitor 661 1030 IPR032675 -
Trre7g00400 1191 Pfam TIR domain 144 309 IPR000157 GO:0007165
Trre7g00400 1191 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 145 963 IPR044974 GO:0006952
Trre7g00400 1191 Gene3D - 481 565 IPR042197 -
Trre7g00400 1191 SMART till_3 144 285 IPR000157 GO:0007165
Trre7g00400 1191 FunFam Disease resistance protein (TIR-NBS-LRR class) 141 313 - -
Trre7g00400 1191 Pfam NB-ARC domain 326 560 IPR002182 GO:0043531
Trre7g00400 1191 SUPERFAMILY "Winged helix" DNA-binding domain 552 658 IPR036390 -
Trre7g00400 1191 SUPERFAMILY Toll/Interleukin receptor TIR domain 140 288 IPR035897 -
Trre7g00400 1191 SUPERFAMILY L domain-like 671 953 - -
Trre7g00400 1191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 576 IPR027417 -
Trre7g00400 1191 Gene3D - 140 317 IPR035897 -
Trre7g00400 1191 Gene3D - 318 476 IPR027417 -
Trre7g00400 1191 PRINTS Disease resistance protein signature 516 530 - -
Trre7g00400 1191 PRINTS Disease resistance protein signature 346 361 - -
Trre7g00400 1191 PRINTS Disease resistance protein signature 423 437 - -
Trre7g00400 1191 PRINTS Disease resistance protein signature 754 770 - -
Trre7g00400 1191 ProSiteProfiles TIR domain profile. 143 311 IPR000157 GO:0007165
Trre7g00400 1191 MobiDBLite consensus disorder prediction 109 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00400 Trre-Chr7 2543623 2549752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00400 141 871 WRKY Transcription Factor Family AT4G12020 31.642 2.24e-89 316
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00400 - - lja:Lj0g3v0331109.1 1414.82