Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00399 ATGTCTTCCCCAACACGTTCCTTTTCTCTTGATTCATATGATGATTCACATCTACGCTATAAATCGTACATTCGTTCTGCCGAGGATTTGGATCCTGACATGGACATGTTACCACCCTGGAAAGAGCAGGATACTCCACAGCACTTTGATACTCCAGACTTTGATAGTTCAGACAGTAGAAGAAAGTTCGATGTGTTCTTGAGTTTCAGAGGAGAAGATACTCGCGCATCTTTCACTTCACATCTCAATTCCTCTCTTCAAAATTCAGGAATTATCGTTTTCAAGGACGATCATTCACTTCAAAGAGGAAGTCGCATTTCAAAATCACTACAGAAAGCAATCGAGGATTCTCAAATTTCTGTTGTTATCTTCTCCAAGAACTACGCCGATTCACATTGGTGTCTTCAAGAGTTAGTGAAAATTATGGAGTGTCGTAGAACTATAGGTCAAGTAGTTCTACCAGTGTTCTACGATGTTGATCCGTCTGAAGTTCGTCATCAAACAGGCGAGTTTGGTAAAGCTTTTCAAAATGCATTGAACTTAAAAGTGAATGAATTCATGGTGCCAAAGTGGAGAGATTCCCTTCGCGATGCCGCTGGTCTTGCAGGATTTGTTGTCCTAAATTCCAGGAACGAAAGCGAGGCCATCAAGAATATTGTACAAAAAGTTGCACATTTGCTTGACAAGACAGATCTGTTCATTGCTGATCATCCAGTGGGAGTCGAATCTCGAGTGCTAGATATGATTCAGCTACTAGACACCCCACTTTCAAATGATGTTCAACTACTAGGGATGTGGGGTATGGGAGGCATTGGCAAAACAACTATTGCAAAATCCATTTACAATAAAGTTGGCCGCAATTTTGAAGGTAGGTGCTTCCTATCAAATATTAGGGAAGTTTGGGAGCAAGATGTTGGTCCTATGTCTTTACAAGAACGTATTTTGTATGATATTTGCAAAGAAACCACAACCAAGATACAAAACATTGAATCAGGAAAATCTGCATTAATGGAAAGACTATGCCATAAAAGAGTACTTCTTGTACTTGACGACGTCAACAAATTGGACCAACTCAAAGCTTTGTGTGGAAGCCGTAAATGGTTTGGTTCAGGGAGTAGGATAATCGTCACAACTAGAGACAAGCAAATAATTAAAGGGAATAGAGTTAACAAAGACTACGTAATGAAAGAAATGAATGCCAGTGAGTCTGTTGAGCTTTTTAGTTGGCATGCATTTAAGGAAGCAACTCCTAGAGAAGATTTTGTTGAAATTTCCAAAAATGTTGTTGCGTATTGTGGGGGACTGCCGCTGGCTCTTGAAGTCCTCGGGTCATATTTGTTTGACAGACCGGTATCAGAGTGGGAATGTGTATTGGAGAAACTCAAGAGAATTCCCAATGATCAAGTACAAAGGAAGTTGAAAATAAGTTATGATGGTTTAAATGATGACACGGAGAGAGATATTTTCCTTGACATAGCTATTTTCTTTATTGGGATGGACAGATCCGATGTTGTGAATATATTAAATGGTTGTGGGCTTTTTGCAGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGCCTTGTAACTGTTAATAATAAAAACAAGCTTGAAATGCATGATTTGCTACGAGATATGGGAAGAGAAATTGTTCGTGAAATAGCTCCAAAGGAGCTTGAGAAGCGTAGCAGGTTATGGTTTCATGAAGATGTCTTGGATGTATTGTCAGATCAAACTGGAACACAAGCTATTGAGGGACTGGTTTTGAAATTGACACCTAATGCAAAATGTTTTAGTACCAAAGCATTTGAGAACATGAAGAAACTTAGATTGCTTCAACTTTCTGGTGTACGACTTGACGGCGATTTTAAATATCTTTCAAGAAGATTGAGATGGCTATGTTGGAATGGATTTCCTTTAGCATGCATGCCTTCAAACTTTGATCAAAGAAACTTAGTTTCCATTGAATTAGAAAACAGCAATATCAAGCTTGTGTGGAAAGAGATGCAGAGGATGGAGAATCTGAAAATTCTTAATCTTAGTCATTCTCATTATCTAACACAGACCCCGGACTTTTCAAACATGCCTAATCTTGAAAAGCTAATACTCAAAGATTGTCCAAGGCTGTCTGAGGTTTCCCATACTATTGGACATCTTCATAAAGTTCTTCTGATAAGTTTGAAAGACTGCATTAGCCTTTCTAACCTTCCAAGAACAATCTATACATTGAAATCTCTGAAAAATCTTATTCTATCTGGATGTTTAATGATTGACAAGTTGGAAGAGGACATAGAACAAATGGAATCTTTAACCACTTTGATTGCAGATAACACTGCTATAACAGAAGTTCCCTTTTCGCTAGCAAGGTCAAAAAGCATTGGATATATTTCTTTGTGTGGCTATAAAGGATCCGCACGTGAAGTATTTCCTTCTATCATTCAATCTTGGATGTCACCCGTAAATAAGTTGTCATCCTTAGTTCAAACACCTCCTGGCATGTATTCTCTTGTTTCTTTAGATGCATCAACAAGTAGCTCTCACAGTCTATCATCTATTTCCGAGGTCATTACAAAGGTTCTAAGTCTCTGGGTAGAGTGCGGCTCAGAACTTCAACTTTCACGAGATTCAATTTTAGATGCTTTAAGTGCAGCTAATTCTAAGGAATTGGAACCAACTGCAACTGCATCACAAGTATCAGTTGAGAAGACTTCTTCATTAATTGAATGTTGTGGTCAAGTACACATTTCAGCAACAAAAAAGTCCCTGAAGTCTCTTCTGTTTCGAATGGGAATGAATTGCCAAGCCGCCGATGTTCTGAAAGAAAGCATCTTACAGAATATGACTGTCAATGCATTGGATGGTTGCTTGATCGCTGGTGATAATTATCCAAATTGGTTAACCTTCAATTCCGAAGGTTCTTCTGTAATATTTACGGTCCCTCAAGTGAAAGTGCGTAACTTGAAGACAATGATGTGCTTTGTCTATTCCTCAAGCCCAGAGAACATAACTTCAGATGGCCTTAACAATGTGTTGGTGATTAATCACACAAAGACCACCATAAAGCTCTATAAGAAAGAGGCATTCTCGTCCTTTCAAAACGGGGACTGGCAGAGAGTGTTATCAAATATGGAACCTGGTGACAAAGTCGAGATTGTTGTTGTTTTTGGGAACAATTTCGTTGTGTTGAAGACAGCAGTTTATCTCATATATGATGAACAAATTGAAGAAAAATTGGAGCAATGTGATTCACCAGATAAAATTTTTGTTGTTGATAGTGGTGATGAAAAGGAATCTGCTGCTAAGAGTATCTCTCTTCAAGTAGAGCCTGCAGATGATTTTAAACTAAAACAGAAAAGAAGTGTTGGGAGTGCAGTTTTAGATAAAAATATGGAACCTGGTGACAAAGTCGAGATTGTTCTTGTTTTTGAGAACAGTTTCATTGTGATGAAGACAGCAATTTATCTCGTATATGATGAACTAATTGGCGAAAATATTGTTAGTAGTTGTAATTCAGTTTGTAGAGAAATAACACAAGTTAGTTATAACTGTCATGTAGTTGAGTTAGTTTTGTTACTTGTAAAAGCATTGTCCCGTGATTGGGAATTGAAGTAA 3609 0.3799 MSSPTRSFSLDSYDDSHLRYKSYIRSAEDLDPDMDMLPPWKEQDTPQHFDTPDFDSSDSRRKFDVFLSFRGEDTRASFTSHLNSSLQNSGIIVFKDDHSLQRGSRISKSLQKAIEDSQISVVIFSKNYADSHWCLQELVKIMECRRTIGQVVLPVFYDVDPSEVRHQTGEFGKAFQNALNLKVNEFMVPKWRDSLRDAAGLAGFVVLNSRNESEAIKNIVQKVAHLLDKTDLFIADHPVGVESRVLDMIQLLDTPLSNDVQLLGMWGMGGIGKTTIAKSIYNKVGRNFEGRCFLSNIREVWEQDVGPMSLQERILYDICKETTTKIQNIESGKSALMERLCHKRVLLVLDDVNKLDQLKALCGSRKWFGSGSRIIVTTRDKQIIKGNRVNKDYVMKEMNASESVELFSWHAFKEATPREDFVEISKNVVAYCGGLPLALEVLGSYLFDRPVSEWECVLEKLKRIPNDQVQRKLKISYDGLNDDTERDIFLDIAIFFIGMDRSDVVNILNGCGLFAEIGISVLVERSLVTVNNKNKLEMHDLLRDMGREIVREIAPKELEKRSRLWFHEDVLDVLSDQTGTQAIEGLVLKLTPNAKCFSTKAFENMKKLRLLQLSGVRLDGDFKYLSRRLRWLCWNGFPLACMPSNFDQRNLVSIELENSNIKLVWKEMQRMENLKILNLSHSHYLTQTPDFSNMPNLEKLILKDCPRLSEVSHTIGHLHKVLLISLKDCISLSNLPRTIYTLKSLKNLILSGCLMIDKLEEDIEQMESLTTLIADNTAITEVPFSLARSKSIGYISLCGYKGSAREVFPSIIQSWMSPVNKLSSLVQTPPGMYSLVSLDASTSSSHSLSSISEVITKVLSLWVECGSELQLSRDSILDALSAANSKELEPTATASQVSVEKTSSLIECCGQVHISATKKSLKSLLFRMGMNCQAADVLKESILQNMTVNALDGCLIAGDNYPNWLTFNSEGSSVIFTVPQVKVRNLKTMMCFVYSSSPENITSDGLNNVLVINHTKTTIKLYKKEAFSSFQNGDWQRVLSNMEPGDKVEIVVVFGNNFVVLKTAVYLIYDEQIEEKLEQCDSPDKIFVVDSGDEKESAAKSISLQVEPADDFKLKQKRSVGSAVLDKNMEPGDKVEIVLVFENSFIVMKTAIYLVYDELIGENIVSSCNSVCREITQVSYNCHVVELVLLLVKALSRDWELK 1202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00399 1202 PRINTS Disease resistance protein signature 339 353 - -
Trre7g00399 1202 PRINTS Disease resistance protein signature 262 277 - -
Trre7g00399 1202 PRINTS Disease resistance protein signature 669 685 - -
Trre7g00399 1202 PRINTS Disease resistance protein signature 432 446 - -
Trre7g00399 1202 Pfam NB-ARC domain 252 471 IPR002182 GO:0043531
Trre7g00399 1202 Gene3D - 225 394 IPR027417 -
Trre7g00399 1202 ProSiteProfiles TIR domain profile. 61 227 IPR000157 GO:0007165
Trre7g00399 1202 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 64 880 IPR044974 GO:0006952
Trre7g00399 1202 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 228 492 IPR027417 -
Trre7g00399 1202 Gene3D - 60 224 IPR035897 -
Trre7g00399 1202 SMART till_3 62 201 IPR000157 GO:0007165
Trre7g00399 1202 MobiDBLite consensus disorder prediction 34 57 - -
Trre7g00399 1202 Pfam TIR domain 62 225 IPR000157 GO:0007165
Trre7g00399 1202 SUPERFAMILY Toll/Interleukin receptor TIR domain 56 204 IPR035897 -
Trre7g00399 1202 Gene3D - 397 481 IPR042197 -
Trre7g00399 1202 FunFam Disease resistance protein (TIR-NBS-LRR class) 59 229 - -
Trre7g00399 1202 SUPERFAMILY L domain-like 552 860 - -
Trre7g00399 1202 Gene3D Ribonuclease Inhibitor 586 887 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00399 Trre-Chr7 2536604 2541777 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00399 668 787 WRKY Transcription Factor Family AT4G12020 32.500 5.64e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00399 - - lja:Lj0g3v0331109.1 1414.82