LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre7g00397	ATGTCTCTCCCAACACGCTCAACTTCCTTTTCTGATGATATAGAATTGGACGATTTTTTGATTACTCATTCGCCTTCGCATTCGGATTCGGATTTGGATTTGGATTTGAAGGAATCGAAAAAACTATCATTGAGTGATTATTATTCGGATTTGGCGTTGAAGGATTTGGAAAAAGTACCATTTGCTGATTATGCTTTGAATCTTGATGATGAATTGGGTGTTGACATGAACTATGCCAACATAAGAAGAAAGTACGACGTGTTCTTGAGTTTCAGAGGTGAAGACACTCGTTCATCCTTCATTTCACATCTCTCCGCTTCTCTTCAGAACGCGGGAATTATCGTTTTCAAAGATGATCATTCACTTCAAAGAGGACATCGCATCTCAAAATCACTACAGGAAGCAATTGAAGATTCTCAAATTTCTGTTGTTGTCTTCTCCAAAAACTACGCAGATTCCCGGTGGTGTCTTCAAGAGTTGATGCAAATTATGAAGTGTTACAGACTTATATGTCAAGTGGTTATACCAGTGTTCTACGATGTTGATCCCTCTGAAGTTCGTCATCAAACAGGTGAGTTTGGTAAAGCTTTTCAAAATGCATTCAACAGTTTCGAAGTGAATGAATTCATGGTGCCAAAGTGGAGAGATTCCCTTCGTGATGCTGCTGGTCTTGCAGGTTTTGTTGTCCTAAATTCCAGGAACGAAAGTGAGGTTATCAAGGATATTGTTCAAAAAGTTACACATTTGCTTGACAAGACAGATCTGTTCATTGCTGATCATCCGGTCGGAGTCGAATCTCGAGTGCAAGATATGATTCAACTACTAGACACCTCACTTTCGAATGATGTTCTAATACTGGGGATGTGGGGTATGGGAGGCATTGGTAAAACAACTATTGCAAAATCAATTTACAATAAAGTTGGCCGCAATTTTGAAGGTAGGTGCTTCTTAGCAAATATTAGGGAAGTTTGGGAGCAAGATGTTGGCCCAATGAATTTACAAGAACGTATTTTGTATGATATCTGCAAAGAAACCACAACCAAGATACAAAACATTGAATCAGGAAAATCTGCATTAATGGAAAGACTGTGCCATAAAAGAGTACTCCTTGTACTTGATGACGTCAATAAATTGGACCAACTCAATGCGCTGTGTGGAAGCCGTAAATGGTTTGGTCCAGGAAGTAGAATAATCATCACAACTAGAGATAAGCAAATAATTAGAGGGAATAGAGTAAACCAAGACTGCATAATGAAAGAAATGGATGATAGTGAGTCTGTTGAGCTTTTTAGTTGGCATGCGTTTAAGAAAGCAACTCCTAGAGAAGATTTTGCTGAAATTTCCAAAAATGTTGTTGAGTATTGTGGGGGACTGCCGCTAGCTCTTGAAGTCCTCGGGTCATATTTGTTTGACAGACCGATAACAGAGTGGGAATGTGTATTAGAGAAACTCAAGAGAATTCCCAATGATCAAGTACAAAGGAAGTTGAAAATAAGCTATGATGGTTTAAATGATGATACGGAGAGAGATATTTTCCTTGACATAGCTATTTTCTTTATTGGGATGAATAGAAATGATGTTGTGCATATATTAAATGGTTGTGGACTTTTTGCCGAAATTGGAATAAGTGTCCTTGTTGAGAGAAGTCTTGTTACTGTTGATAGTAACAACAAGCTTGGAATGCATGATTTGCTTCGAGATATGGGAAGAGAAATCATTCGTGATAAATCACCAAAGGAACTTGAGAAGCGTAGCAGGTTATGGTTTCATGAGGATGTTTTGGATGTATTGTCAGAACAAAATGGAACACAAGCTGTTGAGGGACTGGTTTTGAAGTTGACACCTAATGTAAAATGTTTTAGTACCAAAGCATTTAAGAACATGAAGAAACTTAGATTGCTTCAACTTTCTGGTGTACACCTTGATGGAGATTTTAAATATCTTTCTAGAAGATTGAGATGGCTATGTTGGAAAGAATTTCCTTTAACATGCATGCCTTCAAACTTTGATCAAAGAAACTTAGTTTCCATCGAGTTAGAAAACAGCAATATCAAGTTTGTGTGGAAAGAGATGCAGAGGATGGAGAATCTTAAAATCCTCAATCTTAGTCATTCTCATTATCTAACACAGACCCCAGACTTTTCCAAAATGCCTTATCTTGAAAAGCTAATACTCAAAGATTGTCCAAGGCTGACTGAGGTTTCCCATACCATTGGACATCTTCATAAAGTTCTTCTGATAAATTTGAACGACTGTATTAGCCTTTCTAACCTTCCAAGAACCATCTATACATTGAAATCTCTGAAAAATCTTATTCTATCTGGATGTTTAATGATTGAGAAGTTGGAAGAGGACATAGAACAGATGGAATCTTTAACCACTCTAATTGCTGATAACACTGCTATAACAAAAGTTCCCTTTTCACTAGCAAGGTCGAAAAGCATTGGATATATTTCTTTGAGTGGCTATAAAGGATCTGCACATGAAGTATTTCCTTCTATCATTCAGTCTTGGTTCTCACCAACAAATAAATTGTCATCCTTAGTTCAAACGCCTGCTGGCATGTGTTCTCTTGTTTCTTTAGATGCATCAAAAATAAGTTCCCACAGCCTATCATCTATTTCCGAGGTCCTTCCAAAGGTTCTAAGTCTTTTGGTAGAATGCGGCTCAGAAATTCAACTTTCTCGAGATGCAATTTTAAATGCTTTAGGTGCAGCTAATTCTAAGGAATTGGAATCAATTGCAACTACATCACAAGTAGCAATTGTGAAGACTTCTACATTAATTGAATGTTGTGGTCAAGTTCACATTTCAGCAACAAAACAATCCCTGAAGTCTCTTCTGTTTAGAATGGGAATGAATTGCCAAGCCGCCGATGTTCTGAAAGAAAGCATCTTACAGAATATGACTGTCAATGCATTGGATGGTTGCTTGATCCCTGGTGATAATTTTCCAAATTGGTTAACCTTCAATTCCGAAGGTTCTTCTGTTATTTTTACAGTCCCTCAAGTGAAAGGGCATAACTTGAAGACAATGATGTGCTTCGTCTATTCCTCAAGCCCAGATAACTTAACATCAGATGGACTTAAAAATGTATTGGTGATTAATCACACAAAGACCACCATTCAGCTCTACAAGAGAGAGGCGTTTGCCTCTTTGGAAAACGAAGACTGGCAGAAAGTATTATCAAATATAGAACCTGGTGACAAAGTGGAGATTGTTGTTGTTTTTGGGAACCATTTCATTGTGTTGAAGACAGCAGTTTATCTCATATATGATGAAGCAATCAACGAAAAATTGGAGCAATGTCATGCACCCGATGAGAGGTCCACTCTTCAATGTATTGGAGCAATTGTTGGTAATGAAGATGAAACTGGCACTGCCAAGAGGTCCACTCTTCAAGTAGATCCCGCAGATGATTTTAAACAAACACAGAAAAGAAGAAAACTTGACTGA	3456	0.3776	MSLPTRSTSFSDDIELDDFLITHSPSHSDSDLDLDLKESKKLSLSDYYSDLALKDLEKVPFADYALNLDDELGVDMNYANIRRKYDVFLSFRGEDTRSSFISHLSASLQNAGIIVFKDDHSLQRGHRISKSLQEAIEDSQISVVVFSKNYADSRWCLQELMQIMKCYRLICQVVIPVFYDVDPSEVRHQTGEFGKAFQNAFNSFEVNEFMVPKWRDSLRDAAGLAGFVVLNSRNESEVIKDIVQKVTHLLDKTDLFIADHPVGVESRVQDMIQLLDTSLSNDVLILGMWGMGGIGKTTIAKSIYNKVGRNFEGRCFLANIREVWEQDVGPMNLQERILYDICKETTTKIQNIESGKSALMERLCHKRVLLVLDDVNKLDQLNALCGSRKWFGPGSRIIITTRDKQIIRGNRVNQDCIMKEMDDSESVELFSWHAFKKATPREDFAEISKNVVEYCGGLPLALEVLGSYLFDRPITEWECVLEKLKRIPNDQVQRKLKISYDGLNDDTERDIFLDIAIFFIGMNRNDVVHILNGCGLFAEIGISVLVERSLVTVDSNNKLGMHDLLRDMGREIIRDKSPKELEKRSRLWFHEDVLDVLSEQNGTQAVEGLVLKLTPNVKCFSTKAFKNMKKLRLLQLSGVHLDGDFKYLSRRLRWLCWKEFPLTCMPSNFDQRNLVSIELENSNIKFVWKEMQRMENLKILNLSHSHYLTQTPDFSKMPYLEKLILKDCPRLTEVSHTIGHLHKVLLINLNDCISLSNLPRTIYTLKSLKNLILSGCLMIEKLEEDIEQMESLTTLIADNTAITKVPFSLARSKSIGYISLSGYKGSAHEVFPSIIQSWFSPTNKLSSLVQTPAGMCSLVSLDASKISSHSLSSISEVLPKVLSLLVECGSEIQLSRDAILNALGAANSKELESIATTSQVAIVKTSTLIECCGQVHISATKQSLKSLLFRMGMNCQAADVLKESILQNMTVNALDGCLIPGDNFPNWLTFNSEGSSVIFTVPQVKGHNLKTMMCFVYSSSPDNLTSDGLKNVLVINHTKTTIQLYKREAFASLENEDWQKVLSNIEPGDKVEIVVVFGNHFIVLKTAVYLIYDEAINEKLEQCHAPDERSTLQCIGAIVGNEDETGTAKRSTLQVDPADDFKQTQKRRKLD	1151

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre7g00397	1151	Gene3D	-	248	417	IPR027417	-
	Trre7g00397	1151	Pfam	TIR domain	84	248	IPR000157	GO:0007165
	Trre7g00397	1151	SUPERFAMILY	Toll/Interleukin receptor TIR domain	81	227	IPR035897	-
	Trre7g00397	1151	SMART	till_3	84	224	IPR000157	GO:0007165
	Trre7g00397	1151	PRINTS	Disease resistance protein signature	692	708	-	-
	Trre7g00397	1151	PRINTS	Disease resistance protein signature	455	469	-	-
	Trre7g00397	1151	PRINTS	Disease resistance protein signature	285	300	-	-
	Trre7g00397	1151	PRINTS	Disease resistance protein signature	362	376	-	-
	Trre7g00397	1151	ProSiteProfiles	TIR domain profile.	83	250	IPR000157	GO:0007165
	Trre7g00397	1151	MobiDBLite	consensus disorder prediction	1126	1151	-	-
	Trre7g00397	1151	Gene3D	Ribonuclease Inhibitor	609	914	IPR032675	-
	Trre7g00397	1151	SUPERFAMILY	L domain-like	561	885	-	-
	Trre7g00397	1151	FunFam	Disease resistance protein (TIR-NBS-LRR class)	81	252	-	-
	Trre7g00397	1151	Pfam	NB-ARC domain	265	494	IPR002182	GO:0043531
	Trre7g00397	1151	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	249	515	IPR027417	-
	Trre7g00397	1151	Coils	Coil	779	799	-	-
	Trre7g00397	1151	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	85	892	IPR044974	GO:0006952
	Trre7g00397	1151	Gene3D	-	420	504	IPR042197	-
	Trre7g00397	1151	Gene3D	-	82	247	IPR035897	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre7g00397	Trre-Chr7	2528106	2532945	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre7g00397	691	810	WRKY Transcription Factor Family	AT4G12020	31.667	4.68e-08	55.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre7g00397	-		-	lja:Lj0g3v0331109.1	1414.05