Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00388 ATGATAGTTGCTATGGACTTGAATGCGTCTCCTGTGCCGGAGGAAGATGAAGATGTTTTTGACGAGAGGGTACATGTTCAAGAGTATATTGCACCTGAAGAACGCGTAGAAAGCGGAGCTGAAATAGCACGCCGGGAGCGTGAGGAAAGAAAGAAACGCTTGAAAAGAGAACGTCCAGATGATAGACATGTGCACCCATCACAGTCACCTCGATATGATCAACAATTTCATACAAAAAACCCTAAATCATATGACACAAGTAGGCTTCCTCCGGGGTGGTTAGATTGTCCTGCATCTGGCCAGGAGATCTGCTGCATGATACCTTCTAAGGTTCCTCTTGGTGAATCATTCAATGACTGCATTTTTCCTGGTAAAAGATACTCATTTAAACAAGTGATACATCAACAGAGAGTTTTAGGGAGAAAACTTGGTCTGGTGATTGATTTGACAAATACCTCTCGATACTATCCAGTAACAGATTTAAAAAAAGAGGGTATCAAGCATCTTAAGATTCAATGCAGGGGGCGTGATTCTGTACCTGAAAATTCATCTGTGAATCAATTCGTCTACGAGGTTATACAATTTTTGTCACGCCAAAAGCAGTCAAAGAAGTATATACTTGTTCATTGTACACATGGGCATAATCGTACGGGATACATGATTATCCATTATCTAATGCGTGCTATGTCAATGTCTGTTACTCAGGCAATTAAAATTTTTTCCGAAGCACGCCCTCCAGGAATCTATAAACCCGATTATATTGATGCATTGTACACATTTTATCATGAGAAAAAGCCTGAGATGGTAGTTTGTCCTCCTACTCCGGAGTGGAAAAGATCTTCTGAATTTGATCTCAATGGTGAAGCAGTTCCAGACGATGATGATGATGGATTACCGGGTTCTGATTTGCAGGAGAACCTCGAGACAGGTGCTCAGATGACAAATGATGATGTTTTAGGAGATGAGATACCTGCTGATCAGCAAGATGCATTTCGACAGTTCTGTTATCAAACACTTAGATTGGGTGTTGGGGCCAGAGGACATGCACAATTTCCAGGTTCACACCCAGTTTCTCTCAACAGGGATAATTTGCAGTTATTACGACAGCGTTATTATTATGCAACATGGAAGGCTGATGGTACACGGTATATGATGCTAATAACAATGGATGGGTGTTACTTGATTGATAGAAGTTTTAATTGTCGAAGGGTCCAAATGAGGTTTCCTTGCAGGAGTACGAATGAGGGTTTGGGCGAGAAGACCCACCATTTCACATTACTTGATGGCGAGATGGTTATCGATACCCTGCCAGATTCACATAAGCAGGAGAGAAGATACCTTATATATGATCTCATGGCAATCAACCACGTTTCAGTAATAGAGCGACCCTTCTGTGAACGATGGAAGATGCTTGAGAAAGAAGTGATTGAACCTAGGAATTATGAACGCCAACATATTTACCAGAGCAGAAATCCTTACTACAGATATGATCTGGAACCGTTCAGGGTGAGGAGGAAAGATTTTTGGTTGCTCTCTACAGTCCAAAAGCTTTTAAGGGAATTCATTAAAAGACTCTCACATGAGGCAGATGGTCTCATATTTCAGGGTTGGGACGATCCTTATGTACCACGTACTCACGAAGGACTCTTAAAGTGGAAATACGCCAATTTAAACTCAGTTGACTTTCTGTTTGAGGTTGAAGGTGAGAGGGAGCTACTTTTTGTGAATGAGCGGGGAAAGAAGAAACTCATGGATGGGAATAAGGTTGCTTTCAAAGATGGTTCAGAGCCGTCACTTTATTCTGGAAAGATCATCGAGTGTACTTGGGATTTTGATAACCTGGAATGGATATTCTTGCGAATTAGGACAGATAAATCAACTCCAAACGAGTTTAATACTTACAGAAAGGTGATGCGAAGCATAAAAGACAACATCACAGAGGAAGACTTGTTGAATGAAATAAATGAGATAATTCGCCTTCCCATGTACGCAGACAGGATAAAAACTGATAGTAAAGCAACTCAGCATGCTAATGCTGCAAAGCGAAGGTGA 2052 0.4118 MIVAMDLNASPVPEEDEDVFDERVHVQEYIAPEERVESGAEIARREREERKKRLKRERPDDRHVHPSQSPRYDQQFHTKNPKSYDTSRLPPGWLDCPASGQEICCMIPSKVPLGESFNDCIFPGKRYSFKQVIHQQRVLGRKLGLVIDLTNTSRYYPVTDLKKEGIKHLKIQCRGRDSVPENSSVNQFVYEVIQFLSRQKQSKKYILVHCTHGHNRTGYMIIHYLMRAMSMSVTQAIKIFSEARPPGIYKPDYIDALYTFYHEKKPEMVVCPPTPEWKRSSEFDLNGEAVPDDDDDGLPGSDLQENLETGAQMTNDDVLGDEIPADQQDAFRQFCYQTLRLGVGARGHAQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLIDRSFNCRRVQMRFPCRSTNEGLGEKTHHFTLLDGEMVIDTLPDSHKQERRYLIYDLMAINHVSVIERPFCERWKMLEKEVIEPRNYERQHIYQSRNPYYRYDLEPFRVRRKDFWLLSTVQKLLREFIKRLSHEADGLIFQGWDDPYVPRTHEGLLKWKYANLNSVDFLFEVEGERELLFVNERGKKKLMDGNKVAFKDGSEPSLYSGKIIECTWDFDNLEWIFLRIRTDKSTPNEFNTYRKVMRSIKDNITEEDLLNEINEIIRLPMYADRIKTDSKATQHANAAKRR 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00388 683 MobiDBLite consensus disorder prediction 69 85 - -
Trre7g00388 683 ProSiteProfiles Dual specificity protein phosphatase domain profile. 111 267 IPR020422 GO:0006470|GO:0008138
Trre7g00388 683 SMART dsp_5 123 263 IPR020422 GO:0006470|GO:0008138
Trre7g00388 683 PIRSF mRNA_capping_HCE 75 683 IPR017074 GO:0004484|GO:0006370|GO:0140818
Trre7g00388 683 ProSitePatterns Tyrosine specific protein phosphatases active site. 208 218 IPR016130 GO:0016311|GO:0016791
Trre7g00388 683 SUPERFAMILY Nucleic acid-binding proteins 556 668 IPR012340 -
Trre7g00388 683 FunFam mRNA capping enzyme family protein 85 299 - -
Trre7g00388 683 Gene3D Protein tyrosine phosphatase superfamily 62 284 IPR029021 -
Trre7g00388 683 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 186 255 IPR000387 GO:0016311|GO:0016791
Trre7g00388 683 FunFam mRNA capping enzyme, putative 314 551 - -
Trre7g00388 683 MobiDBLite consensus disorder prediction 34 68 - -
Trre7g00388 683 Gene3D - 552 660 IPR012340 -
Trre7g00388 683 Pfam mRNA capping enzyme, catalytic domain 355 553 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre7g00388 683 Pfam Dual specificity phosphatase, catalytic domain 141 261 IPR000340 GO:0008138|GO:0016311
Trre7g00388 683 FunFam mRNA-capping enzyme 575 668 - -
Trre7g00388 683 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 316 554 - -
Trre7g00388 683 PANTHER MRNA-CAPPING ENZYME 84 665 - -
Trre7g00388 683 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 89 278 IPR029021 -
Trre7g00388 683 ProSiteProfiles ATP-dependent DNA ligase family profile. 446 609 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Trre7g00388 683 CDD RNA_5'-triphosphatase 92 258 - -
Trre7g00388 683 MobiDBLite consensus disorder prediction 285 304 - -
Trre7g00388 683 Gene3D DNA ligase/mRNA capping enzyme 314 551 - -
Trre7g00388 683 Pfam mRNA capping enzyme, C-terminal domain 558 651 IPR013846 -
Trre7g00388 683 MobiDBLite consensus disorder prediction 287 301 - -
Trre7g00388 683 CDD Adenylation_mRNA_capping 343 554 IPR001339 GO:0004484|GO:0005524|GO:0006370
Trre7g00388 683 MobiDBLite consensus disorder prediction 34 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00388 Trre-Chr7 2469411 2483602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00388 1 675 Protein tyrosine phosphatase (PTP) family AT3G09100 68.282 0.0 930
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00388 K13917 - gmx:100776633 1220.3