Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00361 ATGAAGCAAGTGGTGGGAATGGTGGTTTCTAATAAGATGCAGAAATCAGTTGTTGTGGCAGTGGATAGATTATTCCACAACAAAATGTTCAACCGATATGTTAAGCGCACTTCGAAGTTTATGGCTCATGATGAGAACAATCTTTGTAACATCGGTGATCGAGTTCGATTGGATTCTTCTAGGCCTTTGAGCAAGCGTAAACATTGGGTAGTTGCTGAAATTCTCAAGAAAGCACGCATATATGTTCCTCCCTCTGCACCGGTGTCTGAGAATTCGAGCTCGAGCTCTGTAGGGCCTACACCTACATCATGA 312 0.4327 MKQVVGMVVSNKMQKSVVVAVDRLFHNKMFNRYVKRTSKFMAHDENNLCNIGDRVRLDSSRPLSKRKHWVVAEILKKARIYVPPSAPVSENSSSSSVGPTPTS 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00361 103 Hamap 30S ribosomal protein S17 [rpsQ]. 1 76 IPR019984 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 Pfam Ribosomal protein S17 6 73 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 SUPERFAMILY Nucleic acid-binding proteins 2 86 IPR012340 -
Trre7g00361 103 MobiDBLite consensus disorder prediction 86 103 - -
Trre7g00361 103 Gene3D - 1 97 IPR012340 -
Trre7g00361 103 NCBIfam 30S ribosomal protein S17 2 71 IPR019984 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 FunFam 30S ribosomal protein S17 1 100 - -
Trre7g00361 103 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 83 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 PRINTS Ribosomal protein S17 family signature 20 43 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 PRINTS Ribosomal protein S17 family signature 62 69 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 PRINTS Ribosomal protein S17 family signature 52 62 IPR000266 GO:0003735|GO:0005840|GO:0006412
Trre7g00361 103 MobiDBLite consensus disorder prediction 84 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00361 Trre-Chr7 2319713 2320390 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00361 6 75 Cytoplasmic Ribosomal Protein Gene Family AT4G30800 36.620 9.90e-06 40.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00361 K02961 - rcu:8268720 156.377