Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00347 ATGGACATGGTACATCAAAGAAAGAAAACCACCGGGCGGAAGAAGATCGAGATCAAGAAACTTGATAAAGAATCCAATAAACAGGTCACGTTCTCGAAAAGAAGACAAGGATTATTCAAAAAAGCGAGTGAACTTTGTATTTTATGTGATGTTCGTGCAGCTATCATTGTTTTTTCTCCGTCCGATAAACTATATAGTTTTGGTCAACCAAACACCGATGTAATCCTCACTAGCTACATCAATGGAACAACTGAGTTCGAGGTTGCGAAGTCAATGGAAGATTCTTCGATCTATGCTGAGTACAATGAACGATATGAGGAGACACTAAAGGTGTTGGCGATGGAAAAGAAGAAACTGGCTGATGTTGAAAATTTGGCTAAGACTTGGAATAGAGGTGATTGGTGGAATGATTCAATCGATAATATGAGCATTGATCAGCTTGAACAATTTATGATCTCCCTTTATGAGTTAAGGAAGAAGCTTTTTGAAAGGGCTGATGATCTTTTGATGAATAATTTAATGGTTCAATAG 531 0.3748 MDMVHQRKKTTGRKKIEIKKLDKESNKQVTFSKRRQGLFKKASELCILCDVRAAIIVFSPSDKLYSFGQPNTDVILTSYINGTTEFEVAKSMEDSSIYAEYNERYEETLKVLAMEKKKLADVENLAKTWNRGDWWNDSIDNMSIDQLEQFMISLYELRKKLFERADDLLMNNLMVQ 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00347 176 Gene3D - 23 106 IPR036879 GO:0003677|GO:0046983
Trre7g00347 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
Trre7g00347 176 PANTHER MADS BOX PROTEIN 13 163 - -
Trre7g00347 176 SUPERFAMILY SRF-like 12 84 IPR036879 GO:0003677|GO:0046983
Trre7g00347 176 FunFam Agamous-like MADS-box protein AGL62 23 88 - -
Trre7g00347 176 CDD MADS_MEF2_like 12 83 IPR033896 GO:0000977|GO:0045944
Trre7g00347 176 Coils Coil 102 122 - -
Trre7g00347 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Trre7g00347 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Trre7g00347 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Trre7g00347 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Trre7g00347 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 22 67 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00347 Trre-Chr7 2229292 2229822 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00347 8 173 Type I MADS-box Gene Family AT5G60440 41.040 5.61e-37 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre7g00347 SRF-TF 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00347 - - cam:101502875 249.21