Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00309 ATGGATTTCTGGCCAGAGTTTCTTGCAAGTAGTTCAGGTAGAGAATTTGTGGCAGGTGGATTTGGAGGTACTGCTGGTGTAATTTCTGGTTACCCTTTGGATACCCTTAGAATCAGACAACAGAGTGGTCACAATGGTTCTGCTTTTAGCATCCTTAGAAATATGGTATCTAAAGAAGGATTTGCTTCTTTGTACCGTGGAATGGGTGCACCATTAGCATCAGTTACTTTTCAGAATGCTGTGGTTTTTCAAACATATGCAGTTCTTTCAAGGGCATGTGATTCATCCGATTCTGCTAAAGACCCTCCATCCTACAAGAGTGTTGCATTAGGTGGAATGGGCACAGGGGGTCTTCAAAGTTTATTGCTTTCCCCTGTGGAGCTGATTAAAATTCGACTTCAGCTGCAAAACACAAACCAGTCAAAAGAATCAGGAACAAGTCCTTCAAAAGTAGCTAAAAATATATGGAGAAAAGAGGGTTTGCGCGGCATATATCGAGGACTTGGCATCACTATAATGAGGGATGTACCTTCTCATGGATTTTACTTCTGGACATATGAATACATGAGGGAACAATTGCATCCAGGTTGTAGAAAAAGTGGTCAAGAAAGTTTGAATACTATGTTGGTGTCTGGAGGATTAGCAGGGGTAGCAAGTTGGGTTTGTTGCTACCCTTTTGATGTTGTAAAGACAAGACTACAAGCTCAAACACCTTCTTCGCTAAAATACAATGGTGTTTTTGACTGTATCGTAAAAAGTGTCAAAGAAGAAGGATACCTTGTATTGTGGCGTGGTTTAGGAACTGCTGTCTCAAGAGCATTTGTTGTGAATGGTGCTGTATTTGCTGCTTATGAATTTACACTGAGGTTTCTGTTTAACAATGGAAACGTCCAAATTCAGGAAACAATTTAG 912 0.4046 MDFWPEFLASSSGREFVAGGFGGTAGVISGYPLDTLRIRQQSGHNGSAFSILRNMVSKEGFASLYRGMGAPLASVTFQNAVVFQTYAVLSRACDSSDSAKDPPSYKSVALGGMGTGGLQSLLLSPVELIKIRLQLQNTNQSKESGTSPSKVAKNIWRKEGLRGIYRGLGITIMRDVPSHGFYFWTYEYMREQLHPGCRKSGQESLNTMLVSGGLAGVASWVCCYPFDVVKTRLQAQTPSSLKYNGVFDCIVKSVKEEGYLVLWRGLGTAVSRAFVVNGAVFAAYEFTLRFLFNNGNVQIQETI 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00309 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 203 290 IPR018108 -
Trre7g00309 303 Gene3D Mitochondrial carrier domain 10 300 IPR023395 -
Trre7g00309 303 FunFam Mitochondrial arginine transporter BAC2 11 301 - -
Trre7g00309 303 Pfam Mitochondrial carrier protein 207 294 IPR018108 -
Trre7g00309 303 Pfam Mitochondrial carrier protein 109 193 IPR018108 -
Trre7g00309 303 Pfam Mitochondrial carrier protein 12 91 IPR018108 -
Trre7g00309 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 192 IPR018108 -
Trre7g00309 303 SUPERFAMILY Mitochondrial carrier 14 286 IPR023395 -
Trre7g00309 303 PRINTS Mitochondrial carrier protein signature 165 183 IPR002067 GO:0055085
Trre7g00309 303 PRINTS Mitochondrial carrier protein signature 212 234 IPR002067 GO:0055085
Trre7g00309 303 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Trre7g00309 303 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085
Trre7g00309 303 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 10 291 - -
Trre7g00309 303 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 92 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00309 Trre-Chr7 2043073 2045130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00309 1 294 Antiporters AT1G79900 70.169 8.22e-140 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00309 K15109 - gmx:100812056 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00309 7 2043073 2045130 Trre7g00309 7 2043073 2045130 ECH