Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre7g00290 ATGGGTGTGAATTCCAATAGAGTTGATAACTTTGAAACCATTAAAATTCAATCAGAGATACCAATGTTTCAATCACCATTGGAAATTCATAAGGTTAGGTTGCCACCGCAAAGAACCACTCTTCAAAAACTTAGACATAGACTCTCTGAAATCTTTTTTCCTGATGATCCTTTTCATGGATTCAAAAACCAAACTTGGGTTATGAAGTTACTTCTTGCTCTTCAATACTTGTTTCCCATTTTTCAATGGGGTCCTGAGTATAGTTTTCGTCTTTTTCGCTCCGATATCGTCTCTGGTCTCACCATTGCTAGTCTAGCCATTCCTCAGGGGATAAGTTATGCCAAGCTTGCAAACTTGCCACCTATTATTGGATTGTATTCAAGTTTTGTGCCTGCTTTGATATATTCAGTACTTGGAAGTTCTAAACATCTTGGTGTTGGTCCTGTTTCAATTGCATCATTAGTTATGGGATCAATGTTAAGTGAAAGTGTTTCTTATAGTCAAGATCCAATTCTCTATCTTAAATTGGCTTTCACTGCCACCTTTTTTGCTGGATTATTCCAATCCTCTCTTGGTGTATTAAGGTTAGGCTTTGTGATTGATTTTCTATCAAAGGCAACATTGGTAGGTTTCATGGCTGGTGCAGCAATAATTGTGTCACTACAACAACTCAAAGGGTTACTAGGAATAGTTCATTTCACCAACAAAATGCAAATTCTACCTGTTTTGGTCTCTGTTTTCAAGCAAAGAGACGAGTGGTCATGGCAAACTATTTTACTAGGATTCAGTTTCCTAGTCTTTCTGCTGATAACAAGACACATTAGCTTGAAGAAGCCAAAATTATTCTGGATTTCAGCAGCTGCACCATTGACTTCAGTTATTCTATCAACCATTTTAGTCTTTTCTATGAGAAATAAGATTCATAAAATAGCAATTATTGGTGAATTGCCAAAAGGACTTAATCCACCATCATCAAACATGTTATACTTCAATGGTCCTTATTTGACTCTTGCTATCAAAACTGGACTTGTCACTGGCATCTTGTCTCTCACTGAAGGAATTGCAGTTGGAAGAACATTTGCATCACTTAGGAACTACCAAGTAGATGGAAACAAAGAAATGATGGCTATTGGTCTTATGAACATAGCTGGTTCTTGTTCTTCATGTTATGTCACCACAGGATCCTTTTCACGATCGGCCGTTAACTACAATGCCGGAGCACAAACAGCAGTCTCAAATATAATTATGGCTTCAGCAGTTCTTGTCACACTTCTGTTTCTCATGCCACTGTTCTATTACACACCGAATGTTGTCTTAGCAGCCATTATCATCACTGCTGTTATCGGTCTAATCGATTACCGAGCTGCGTACAAGTTGTGGAAGGTTGACAAGCTTGATTTCACGGCGTGTTTGTGTTCCTTTTTTGGTGTTCTCTTCATTTCAGTTCCATTAGGCCTTGCAATCGCGGTGGCAATATCAATCTTCAAAATCCTGCTTCATGTCTCTAGGCCAAACACAATGGTTTTCGGAAACATTCCAGGGACACCAATTTTCCATAACTTAAATCAATATAAAGAAGCTTTAAGGATTCCTTCATTTATCATTTTGGCTGTTGAATCTCCCATCTACTTTGCTAATGCAACTTACCTGCAAGAAAGGGTACTGAGATGGGTTCGAGAAGAGGAAGAGTGTGTAATAGCAAACAATGGAAGTACATTGAAATGCATGATTTTAGACATGACAGCCGTAACAGGCATAGACACAAGCGGAATCGACACATTATGTGAACTTAGAAGGAGACTAGAACAAAAATCACTTCAGCTTGTATTGGCAAATCCTATTGGAAATGTGATGGAAAAGTTGCATGAATCAAATATTTTGGAGTCCTTTGGAATGAAAGGAGTGTATCTCTCAGTAGGAGAAGCAGTGGCTGACATTTCATCATCGTGGAAAGCTCAGCCTTGA 1965 0.3847 MGVNSNRVDNFETIKIQSEIPMFQSPLEIHKVRLPPQRTTLQKLRHRLSEIFFPDDPFHGFKNQTWVMKLLLALQYLFPIFQWGPEYSFRLFRSDIVSGLTIASLAIPQGISYAKLANLPPIIGLYSSFVPALIYSVLGSSKHLGVGPVSIASLVMGSMLSESVSYSQDPILYLKLAFTATFFAGLFQSSLGVLRLGFVIDFLSKATLVGFMAGAAIIVSLQQLKGLLGIVHFTNKMQILPVLVSVFKQRDEWSWQTILLGFSFLVFLLITRHISLKKPKLFWISAAAPLTSVILSTILVFSMRNKIHKIAIIGELPKGLNPPSSNMLYFNGPYLTLAIKTGLVTGILSLTEGIAVGRTFASLRNYQVDGNKEMMAIGLMNIAGSCSSCYVTTGSFSRSAVNYNAGAQTAVSNIIMASAVLVTLLFLMPLFYYTPNVVLAAIIITAVIGLIDYRAAYKLWKVDKLDFTACLCSFFGVLFISVPLGLAIAVAISIFKILLHVSRPNTMVFGNIPGTPIFHNLNQYKEALRIPSFIILAVESPIYFANATYLQERVLRWVREEEECVIANNGSTLKCMILDMTAVTGIDTSGIDTLCELRRRLEQKSLQLVLANPIGNVMEKLHESNILESFGMKGVYLSVGEAVADISSSWKAQP 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre7g00290 654 ProSiteProfiles STAS domain profile. 523 646 IPR002645 -
Trre7g00290 654 SUPERFAMILY SpoIIaa-like 529 645 IPR036513 -
Trre7g00290 654 Pfam STAS domain 524 642 IPR002645 -
Trre7g00290 654 NCBIfam sulfate permease 79 642 IPR001902 GO:0016020|GO:0055085
Trre7g00290 654 Pfam Sulfate permease family 92 471 IPR011547 GO:0016020
Trre7g00290 654 Gene3D STAS domain 503 648 IPR036513 -
Trre7g00290 654 ProSitePatterns SLC26A transporters signature. 121 142 IPR018045 GO:0008271|GO:0008272
Trre7g00290 654 FunFam Sulfate transporter 31 503 649 - -
Trre7g00290 654 PANTHER SULFATE TRANSPORTER 41 646 IPR001902 GO:0016020|GO:0055085
Trre7g00290 654 CDD STAS_SulP_like_sulfate_transporter 524 639 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre7g00290 Trre-Chr7 1942236 1947534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre7g00290 1 654 Inorganic Solute Cotransporters AT3G15990 73.476 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre7g00290 K17471 - gmx:100780331 1105.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre7g00290 7 1942236 1947534 Trre7g00290 7 1942236 1947534 ECH
Trre11g04772 11 58981769 58986989 Trre7g00290 7 1942236 1947534 PCT